Code for module that installs BioConductor base packages, as well as DESeq2 and other useful packages on top of a system R module.
Small Snakemake Snakefiles demonstrating techniques
Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.
Ray-trace a PyMol session on cheaha
PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics
