diff --git a/README.md b/README.md index 60b39950759149de1cfe97f1f9321053d36f2824..517b8ec09ae0639ae451e49cb68f5c040f402397 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,8 @@ -Quick start -System requirements: +#Quick start +##System requirements: Linux/Unix Python (>= 3.7) -Install Scanpy through conda: +##Install Scanpy through conda: The Miniconda3 package management system can be used to harmonize all of the software packages. We can install Scanpy using the conda environment. Use the following commands to install Minicoda3£º $ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh @@ -19,9 +19,9 @@ $ conda install -c conda-forge python-igraph leidenalg $ conda install -c bioconda scanpy $ conda install -c anaconda ipykernel -Clone the repository: +## Clone the repository: $ git clone git@gitlab.rc.uab.edu:attis2021/single_cell_rnaseq_scanpy.git -Tutorial: +## Tutorial: A more detailed tutorial of how to analyze PBMC data use Scanpy can be found in file scanpy_pbmc_tutorial.ipynb.