diff --git a/SaveTranscriptions.m b/SaveTranscriptions.m
index 9c35e810f2d8b0c654f530a81184220e83847e5b..d4b6bbd3e6357805a5a31c0a88c8868e70bd0d85 100644
--- a/SaveTranscriptions.m
+++ b/SaveTranscriptions.m
@@ -3,7 +3,7 @@
 % Prepare work space
 clc
 
-checkVersion()
+% checkVersion()
 
 % Check for miscelaneous transcriptions in the work space
 miscLS = who('-regexp', '^ls(([0-9]*$)|($))');
@@ -109,6 +109,16 @@ function lss = TransferLabels(ls, lss)
 % Clear lss labels
 resetLabelValues(lss)
 
+% Update lss labels to match ls
+subLabelList = split(strtrim(extract(labelDefinitionsHierarchy(lss), regexpPattern('(?<=Sublabels:).*'))));
+lsSubLabelList = split(strtrim(extract(labelDefinitionsHierarchy(ls), regexpPattern('(?<=Sublabels:).*'))));
+isNewLabel = ~contains(lsSubLabelList, subLabelList);
+
+if any(isNewLabel)
+    curLabelDef = getLabelDefinitions(ls);
+    addLabelDefinitions(lss, curLabelDef.Sublabels(isNewLabel), curLabelDef.Name)
+end
+
 % Move ls labels to lss
 nTrials = height(ls.Labels);
 for iTrial = 1:nTrials
@@ -122,10 +132,22 @@ for iTrial = 1:nTrials
     setLabelValue(lss, iTrial, 'Words', curROI, curVal)
     
     % Set sublabel Values
-    subLabelList = split(strtrim(extract(labelDefinitionsHierarchy(lss), regexpPattern('(?<=Sublabels:).*'))));
-    for curLabel = subLabelList'
-        setLabelValue(lss, iTrial, ["Words", string(curLabel)], ls.Labels.Words{1}.Sublabels.(curLabel{1}), 'LabelRowIndex', 1)
+    curSpans = ls.Labels.Words{iTrial};
+    nSpans = height(curSpans);
+    for iSpan = 1:nSpans
+        for curLabel = lsSubLabelList'
+            labelValues = ls.Labels.Words{iTrial}.Sublabels.(curLabel{1});
+
+            if isa(labelValues, 'cell')
+                labelValue = labelValues{iSpan};
+            else
+                labelValue = labelValues(iSpan);
+            end
+
+            setLabelValue(lss, iTrial, ["Words", string(curLabel)], labelValue, "LabelRowIndex", iSpan)
+        end
     end
+
 end
 
 end