Why does "Per Base Sequence Content" always fail in fastqc-trimmed?

This is due to the settings we use with trim_galore in small variant caller pipeline. This failure is expected as explained by trim_galore's author here.

changed the description

Due to this expected failure of the fastqc module "Per Base Sequence Content" in the current setup, it is recommended to check the fastqc results of raw fastq (before trimming) for this particular module.

mentioned in issue #31

closed