From 5f0e7f8145d6738125bf1f8f324e44d3ebeecaa0 Mon Sep 17 00:00:00 2001
From: Robert Phillips <rphill3@uab.edu>
Date: Mon, 29 Jun 2020 18:10:41 -0500
Subject: [PATCH] Upload New File

---
 Step_1/Step1_samtools_merge_sort_index_Cor.sh.txt | 9 +++++++++
 1 file changed, 9 insertions(+)
 create mode 100644 Step_1/Step1_samtools_merge_sort_index_Cor.sh.txt

diff --git a/Step_1/Step1_samtools_merge_sort_index_Cor.sh.txt b/Step_1/Step1_samtools_merge_sort_index_Cor.sh.txt
new file mode 100644
index 0000000..437ad0c
--- /dev/null
+++ b/Step_1/Step1_samtools_merge_sort_index_Cor.sh.txt
@@ -0,0 +1,9 @@
+module load SAMtools
+
+cd /data/user/rphill3/Enhancer_Ident_ATAC
+
+samtools merge Cor_ATAC_merged.bam  ATAC_K2_S1.bam ATAC_K3_S2.bam ATAC_K4_S3.bam ATAC_V1_S4.bam ATAC_V2_S5.bam ATAC_V3_S6.bam
+
+samtools sort Cor_ATAC_merged.bam -o Cor_ATAC_merged.sorted.bam
+
+samtools index Cor_ATAC_merged.sorted.bam Cor_ATAC_merged.sorted.bam.bai
-- 
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