Explore projects

This is an source controlled version of Jon Marstrander's directional divergence matlab code and other useful matlab utilities for managing AFNI data.

Basic Singularity container commands

Repo for testing http://docs.openstack.org/infra/openstackci/third_party_ci.html#create-an-initial-project-config-repository

Describes the zuul (gating), nodepool (image management), and jenkins (ci job management) tasks that drives openstackci.

A Batch Connect app designed for OSC OnDemand implementation that launches MATLAB within an Owens batch job

Experiment with new slurm features in dev environment

a python script wrap tcl2lua.tcl, provided by lmod, converts tcl module files into lua module files

Building out HPC images on OpenStack

Batch Connect - Example Jupyter Notebook Server

This project contains sample slurm job scripts.

Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.