diff --git a/README.md b/README.md index 90f4cc01d74616ac4708d098e16eb101244acc4b..f29788efddf74a1067dd8074298f168154812f0f 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ else fi ``` -# Check to see if the environment works +# Configuring the environment After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works. @@ -32,9 +32,7 @@ Under environment setup, specify ``` # Load required modules module load cuda10.0/toolkit -module load Anaconda3 - - +module load Anaconda3/2019.10 ``` Under Extra jupyter arguments, specify @@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify --notebook-dir=/data/user/$USER/slurm-ds ``` -For partition, specify - +For partition, set partition to +``` +express ``` -pascalnodes +for time up to 2 hours. Also make sure to specify the number of hours field to match. For up to 12 hours, the ``` +short +``` +partition can be used. + +After the Jupyter notebook is started, click on the blue "Connect to Jupyter" button. + +Once the Jupyter session is active, select the `slurm-2sql` notebook. Then change the kernel, via `Kernel->Change kernel->Python [conda env:.conda-slurm-ds]` + +Verify the environment loaded correctly by running the first cell of the `slurm-2sql` notebook (with the library imports) # Creating a text version of sacct output