From d8cad0c7bedea12afa5461093508f745b0d09a4c Mon Sep 17 00:00:00 2001
From: William Stonewall Monroe <wsmonroe@uab.edu>
Date: Tue, 31 Mar 2020 15:12:09 -0500
Subject: [PATCH] updating readme to appropriately configure env

---
 README.md | 22 +++++++++++++++-------
 1 file changed, 15 insertions(+), 7 deletions(-)

diff --git a/README.md b/README.md
index 90f4cc0..f29788e 100644
--- a/README.md
+++ b/README.md
@@ -23,7 +23,7 @@ else
 fi
 ```
 
-# Check to see if the environment works
+# Configuring the environment
 
 After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works.
 
@@ -32,9 +32,7 @@ Under environment setup, specify
 ```
 # Load required modules
 module load cuda10.0/toolkit
-module load Anaconda3
-
-
+module load Anaconda3/2019.10
 ```
 
 Under Extra jupyter arguments, specify
@@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify
 --notebook-dir=/data/user/$USER/slurm-ds
 ```
 
-For partition, specify
-
+For partition, set partition to 
+```
+express
 ```
-pascalnodes
+for time up to 2 hours. Also make sure to specify the number of hours field to match. For up to 12 hours, the  
 ```
+short
+```
+partition can be used.
+
+After the Jupyter notebook is started, click on the blue "Connect to Jupyter" button.
+
+Once the Jupyter session is active, select the `slurm-2sql` notebook. Then change the kernel, via `Kernel->Change kernel->Python [conda env:.conda-slurm-ds]`
+
+Verify the environment loaded correctly by running the first cell of the `slurm-2sql` notebook (with the library imports)
 
 # Creating a text version of sacct output
 
-- 
GitLab