From d8cad0c7bedea12afa5461093508f745b0d09a4c Mon Sep 17 00:00:00 2001 From: William Stonewall Monroe <wsmonroe@uab.edu> Date: Tue, 31 Mar 2020 15:12:09 -0500 Subject: [PATCH] updating readme to appropriately configure env --- README.md | 22 +++++++++++++++------- 1 file changed, 15 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 90f4cc0..f29788e 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ else fi ``` -# Check to see if the environment works +# Configuring the environment After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works. @@ -32,9 +32,7 @@ Under environment setup, specify ``` # Load required modules module load cuda10.0/toolkit -module load Anaconda3 - - +module load Anaconda3/2019.10 ``` Under Extra jupyter arguments, specify @@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify --notebook-dir=/data/user/$USER/slurm-ds ``` -For partition, specify - +For partition, set partition to +``` +express ``` -pascalnodes +for time up to 2 hours. Also make sure to specify the number of hours field to match. For up to 12 hours, the ``` +short +``` +partition can be used. + +After the Jupyter notebook is started, click on the blue "Connect to Jupyter" button. + +Once the Jupyter session is active, select the `slurm-2sql` notebook. Then change the kernel, via `Kernel->Change kernel->Python [conda env:.conda-slurm-ds]` + +Verify the environment loaded correctly by running the first cell of the `slurm-2sql` notebook (with the library imports) # Creating a text version of sacct output -- GitLab