diff --git a/.ipynb_checkpoints/importSACCTinfo-checkpoint.ipynb b/.ipynb_checkpoints/importSACCTinfo-checkpoint.ipynb
deleted file mode 100644
index 5bb52fdb37bad4600da16ee15ec30eb2abc30fbc..0000000000000000000000000000000000000000
--- a/.ipynb_checkpoints/importSACCTinfo-checkpoint.ipynb
+++ /dev/null
@@ -1,2879 +0,0 @@
-{
- "cells": [
- {
- "cell_type": "code",
- "execution_count": 1,
- "metadata": {
- "ExecuteTime": {
- "end_time": "2020-02-18T21:17:12.464096Z",
- "start_time": "2020-02-18T21:16:56.025053Z"
- }
- },
- "outputs": [],
- "source": [
- "import numpy as np\n",
- "import pandas as pd\n",
- "import pandas_profiling"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 7,
- "metadata": {
- "ExecuteTime": {
- "end_time": "2020-02-18T21:28:36.193817Z",
- "start_time": "2020-02-18T21:28:34.862693Z"
- }
- },
- "outputs": [],
- "source": [
- "df = pd.read_csv('userusage.txt',delimiter='|')"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 14,
- "metadata": {
- "ExecuteTime": {
- "end_time": "2020-02-18T21:32:06.478695Z",
- "start_time": "2020-02-18T21:32:06.464638Z"
- }
- },
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
- " }\n",
- "\n",
- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>User</th>\n",
- " <th>Start</th>\n",
- " <th>JobID</th>\n",
- " <th>JobName</th>\n",
- " <th>State</th>\n",
- " <th>Partition</th>\n",
- " <th>MaxRSS</th>\n",
- " <th>ReqMem</th>\n",
- " <th>ReqCPUS</th>\n",
- " <th>NodeList</th>\n",
- " <th>NNodes</th>\n",
- " <th>Elapsed</th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " <tr>\n",
- " <th>0</th>\n",
- " <td>user</td>\n",
- " <td>2019-01-06T22:00:21</td>\n",
- " <td>2040834</td>\n",
- " <td>_interactive</td>\n",
- " <td>COMPLETED</td>\n",
- " <td>medium</td>\n",
- " <td>NaN</td>\n",
- " <td>10000Mc</td>\n",
- " <td>1</td>\n",
- " <td>c0088</td>\n",
- " <td>1</td>\n",
- " <td>16:04:23</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>1</th>\n",
- " <td>NaN</td>\n",
- " <td>2019-01-06T22:00:21</td>\n",
- " <td>2040834.batch</td>\n",
- " <td>batch</td>\n",
- " <td>COMPLETED</td>\n",
- " <td>NaN</td>\n",
- " <td>1394528K</td>\n",
- " <td>10000Mc</td>\n",
- " <td>1</td>\n",
- " <td>c0088</td>\n",
- " <td>1</td>\n",
- " <td>16:04:23</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>2</th>\n",
- " <td>user</td>\n",
- " <td>2019-01-07T16:15:21</td>\n",
- " <td>2043373</td>\n",
- " <td>Pipe_trim_galore</td>\n",
- " <td>COMPLETED</td>\n",
- " <td>medium</td>\n",
- " <td>NaN</td>\n",
- " <td>2000Mc</td>\n",
- " <td>1</td>\n",
- " <td>c0038</td>\n",
- " <td>1</td>\n",
- " <td>00:18:41</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>3</th>\n",
- " <td>NaN</td>\n",
- " <td>2019-01-07T16:15:21</td>\n",
- " <td>2043373.batch</td>\n",
- " <td>batch</td>\n",
- " <td>COMPLETED</td>\n",
- " <td>NaN</td>\n",
- " <td>58592K</td>\n",
- " <td>2000Mc</td>\n",
- " <td>1</td>\n",
- " <td>c0038</td>\n",
- " <td>1</td>\n",
- " <td>00:18:41</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>4</th>\n",
- " <td>user</td>\n",
- " <td>2019-01-07T16:15:21</td>\n",
- " <td>2043374</td>\n",
- " <td>Pipe_trim_galore</td>\n",
- " <td>COMPLETED</td>\n",
- " <td>medium</td>\n",
- " <td>NaN</td>\n",
- " <td>2000Mc</td>\n",
- " <td>1</td>\n",
- " <td>c0063</td>\n",
- " <td>1</td>\n",
- " <td>00:15:48</td>\n",
- " </tr>\n",
- " </tbody>\n",
- "</table>\n",
- "</div>"
- ],
- "text/plain": [
- " User Start JobID JobName State \\\n",
- "0 user 2019-01-06T22:00:21 2040834 _interactive COMPLETED \n",
- "1 NaN 2019-01-06T22:00:21 2040834.batch batch COMPLETED \n",
- "2 user 2019-01-07T16:15:21 2043373 Pipe_trim_galore COMPLETED \n",
- "3 NaN 2019-01-07T16:15:21 2043373.batch batch COMPLETED \n",
- "4 user 2019-01-07T16:15:21 2043374 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \n",
- "0 medium NaN 10000Mc 1 c0088 1 16:04:23 \n",
- "1 NaN 1394528K 10000Mc 1 c0088 1 16:04:23 \n",
- "2 medium NaN 2000Mc 1 c0038 1 00:18:41 \n",
- "3 NaN 58592K 2000Mc 1 c0038 1 00:18:41 \n",
- "4 medium NaN 2000Mc 1 c0063 1 00:15:48 "
- ]
- },
- "execution_count": 14,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "df.head()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 27,
- "metadata": {
- "ExecuteTime": {
- "end_time": "2020-02-18T21:46:50.320249Z",
- "start_time": "2020-02-18T21:46:48.145949Z"
- }
- },
- "outputs": [
- {
- "data": {
- "text/plain": [
- "array(['medium', nan, 'medium', ..., 'medium', nan, nan], dtype=object)"
- ]
- },
- "execution_count": 27,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "df[['jid','step']] = df.JobID.str.split(\".\",expand=True) \n",
- "df.Partition.values"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 38,
- "metadata": {
- "ExecuteTime": {
- "end_time": "2020-02-18T21:54:58.373117Z",
- "start_time": "2020-02-18T21:53:34.613891Z"
- }
- },
- "outputs": [
- {
- "name": "stderr",
- "output_type": "stream",
- "text": [
- "/home/wsmonroe/.conda/envs/wsmplayground/lib/python3.6/site-packages/ipykernel_launcher.py:4: SettingWithCopyWarning: \n",
- "A value is trying to be set on a copy of a slice from a DataFrame\n",
- "\n",
- "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n",
- " after removing the cwd from sys.path.\n",
- "/home/wsmonroe/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/generic.py:7626: SettingWithCopyWarning: \n",
- "A value is trying to be set on a copy of a slice from a DataFrame\n",
- "\n",
- "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n",
- " self._update_inplace(new_data)\n",
- "/home/wsmonroe/.conda/envs/wsmplayground/lib/python3.6/site-packages/IPython/core/interactiveshell.py:2961: SettingWithCopyWarning: \n",
- "A value is trying to be set on a copy of a slice from a DataFrame\n",
- "\n",
- "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n",
- " exec(code_obj, self.user_global_ns, self.user_ns)\n"
- ]
- },
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- " User Start JobID JobName State Partition \\\n",
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- "\n",
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- "10 None \n",
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- "62 medium NaN 2000Mc 1 c0050 1 00:16:27 2043914 None \n",
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- "\n",
- " step \n",
- "84 None \n",
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- "87 short NaN 2000Mc 2 c0044 1 00:03:56 2043935 None \n",
- " User Start JobID JobName State \\\n",
- "89 user 2019-01-07T18:08:44 2043936 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "89 short NaN 2000Mc 2 c0044 1 00:04:53 2043936 None \n",
- " User Start JobID JobName State \\\n",
- "91 user 2019-01-07T18:16:04 2043942 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "91 short NaN 2000Mc 2 c0044 1 00:04:01 2043942 None \n",
- " User Start JobID JobName State Partition \\\n",
- "93 user 2019-01-07T18:16:44 2043943 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "93 NaN 10000Mc 6 c0013 1 00:03:41 2043943 None \n",
- " User Start JobID JobName State Partition \\\n",
- "95 user 2019-01-07T18:16:44 2043944 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "95 NaN 10000Mc 6 c0015 1 00:03:49 2043944 None \n",
- " User Start JobID JobName State Partition \\\n",
- "97 user 2019-01-07T18:16:45 2043945 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "97 NaN 10000Mc 6 c0024 1 00:05:21 2043945 None \n",
- " User Start JobID JobName State Partition \\\n",
- "99 user 2019-01-07T18:20:34 2043963 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "99 NaN 2000Mc 1 c0072 1 00:01:29 2043963 None \n",
- " User Start JobID JobName State Partition \\\n",
- "101 user 2019-01-07T18:20:34 2043964 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "101 NaN 2000Mc 1 c0063 1 00:01:22 2043964 None \n",
- " User Start JobID JobName State Partition \\\n",
- "103 user 2019-01-07T18:22:15 2043968 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "103 NaN 2000Mc 1 c0072 1 00:01:54 2043968 None \n",
- " User Start JobID JobName State \\\n",
- "105 user 2019-01-07T18:24:25 2043976 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "105 short NaN 2000Mc 2 c0044 1 00:05:29 2043976 \n",
- "\n",
- " step \n",
- "105 None \n",
- " User Start JobID JobName State Partition \\\n",
- "107 user 2019-01-07T18:24:25 2043977 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "107 NaN 10000Mc 6 c0013 1 00:05:20 2043977 None \n",
- " User Start JobID JobName State \\\n",
- "109 user 2019-01-07T18:29:55 2043995 Pipe_featurecounts COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "109 short NaN 5000Mc 12 c0029 1 00:10:07 2043995 \n",
- "\n",
- " step \n",
- "109 None \n"
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- "\n",
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- "111 NaN 2000Mc 1 c0029 1 00:01:42 2043996 None \n",
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- "113 user 2019-01-07T18:40:06 2044027 Pipe_fix_counts COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "113 express NaN 2000Mc 1 c0070 1 00:00:08 2044027 \n",
- "\n",
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- "113 None \n",
- " User Start JobID JobName State Partition \\\n",
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- "117 user 2019-01-07T18:40:56 2044032 Pipe_report COMPLETED express \n",
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- "119 user 2019-01-07T20:45:14 2044530 _interactive CANCELLED by 10729 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "119 medium NaN 10000Mc 1 c0010 1 00:45:09 2044530 \n",
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- "119 None \n",
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- "122 user 2019-01-07T21:31:33 2044604 _interactive CANCELLED by 10729 \n",
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- "122 medium NaN 10000Mc 1 c0013 1 02:19:14 2044604 \n",
- "\n",
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- "122 None \n",
- " User Start JobID JobName State \\\n",
- "125 user 2019-01-07T23:50:52 2044761 _interactive CANCELLED by 10729 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "125 medium NaN 10000Mc 1 c0005 1 00:12:48 2044761 \n",
- "\n",
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- "125 None \n",
- " User Start JobID JobName State \\\n",
- "128 user 2019-01-08T00:04:35 2044771 _interactive CANCELLED by 10729 \n",
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- "128 medium NaN 10000Mc 1 c0013 1 00:01:31 2044771 \n",
- "\n",
- " step \n",
- "128 None \n",
- " User Start JobID JobName State \\\n",
- "130 user 2019-01-08T00:06:24 2044775 _interactive CANCELLED by 10729 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "130 medium NaN 10000Mc 1 c0013 1 00:02:49 2044775 \n",
- "\n",
- " step \n",
- "130 None \n",
- " User Start JobID JobName State \\\n",
- "132 user 2019-01-08T00:09:19 2044778 _interactive COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "132 interactive NaN 1Gc 1 c0004 1 00:00:08 2044778 \n",
- "\n",
- " step \n",
- "132 None \n",
- " User Start JobID JobName State \\\n",
- "135 user 2019-01-08T00:09:59 2044780 _interactive CANCELLED by 10729 \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "135 medium NaN 10000Mc 1 c0013 1 00:34:42 2044780 \n",
- "\n",
- " step \n",
- "135 None \n",
- " User Start JobID JobName State Partition \\\n",
- "138 user 2019-01-08T14:20:32 2045986 _interactive TIMEOUT medium \n",
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- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "138 NaN 10000Mc 1 c0045 1 1-00:00:23 2045986 None \n",
- " User Start JobID JobName State Partition \\\n",
- "141 user 2019-01-08T15:39:42 2046469 PS_MATLAB CANCELLED by 0 medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "141 NaN 12000Mc 1 c0011 1 01:36:00 2046469 None \n",
- " User Start JobID JobName State Partition \\\n",
- "144 user 2019-01-08T17:17:10 2046737 _interactive TIMEOUT medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "144 NaN 10000Mc 1 c0011 1 1-00:00:17 2046737 None \n",
- " User Start JobID JobName State Partition MaxRSS \\\n",
- "147 user 2019-01-09T10:54:46 2047828 PS_MATLAB TIMEOUT medium NaN \n",
- "\n",
- " ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "147 12000Mc 1 c0005 1 1-00:00:26 2047828 None \n",
- " User Start JobID JobName State Partition \\\n",
- "150 user 2019-01-09T12:59:29 2047944 usermatlab TIMEOUT medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "150 NaN 4Gc 4 c0011 1 08:00:08 2047944 None \n",
- " User Start JobID JobName State Partition \\\n",
- "153 user 2019-01-09T13:06:17 2047950 usermatlab COMPLETED medium \n",
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- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "153 NaN 4Gc 4 c0061 1 00:10:09 2047950 None \n",
- " User Start JobID JobName State Partition \\\n",
- "156 user 2019-01-10T09:47:50 2050611 mkb_matlab TIMEOUT medium \n",
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- "156 NaN 4Gc 1 c0034 1 12:00:01 2050611 None \n",
- " User Start JobID JobName State Partition \\\n",
- "159 user 2019-01-10T10:55:44 2050665 _interactive TIMEOUT medium \n",
- "\n",
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- "159 NaN 10000Mc 1 c0005 1 1-00:00:16 2050665 None \n",
- " User Start JobID JobName State Partition \\\n",
- "162 user 2019-01-10T13:11:15 2050945 usermatlab COMPLETED medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "162 NaN 4Gc 4 c0080 1 02:54:24 2050945 None \n",
- " User Start JobID JobName State Partition \\\n",
- "165 user 2019-01-10T13:35:40 2051227 usermatlab COMPLETED medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "165 NaN 4Gc 4 c0037 1 02:00:19 2051227 None \n",
- " User Start JobID JobName State \\\n",
- "168 user 2019-01-10T15:43:53 2051659 lfmatlab CANCELLED by 10730 \n",
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- "168 medium NaN 4Gc 1 c0063 1 00:06:19 2051659 None \n",
- " User Start JobID JobName State \\\n",
- "171 user 2019-01-10T15:48:19 2051669 _interactive CANCELLED by 10729 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "171 medium NaN 10000Mc 1 c0009 1 22:19:44 2051669 \n",
- "\n",
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- "171 None \n",
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- "174 user 2019-01-10T15:50:14 2051673 lfmatlab CANCELLED by 10730 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "174 medium NaN 4Gc 1 c0050 1 00:08:31 2051673 None \n",
- " User Start JobID JobName State \\\n",
- "177 user 2019-01-10T16:00:27 2051683 lfmatlab CANCELLED by 10730 \n",
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- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "177 medium NaN 4Gc 1 c0050 1 18:38:59 2051683 None \n",
- " User Start JobID JobName State \\\n",
- "180 user 2019-01-10T17:25:17 2051802 _interactive COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "180 medium NaN 10000Mc 1 c0016 1 00:12:50 2051802 \n",
- "\n",
- " step \n",
- "180 None \n"
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- "\n",
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- "252 subj209.lh.V1.OppPRL.6.2to8.2.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "252 1 c0018 1 00:00:18 2058083 None \n",
- " User Start JobID \\\n",
- "254 user 2019-01-11T15:44:17 2058084 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "254 subj310.lh.V1.OppPRL.6.3to11.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "254 1 c0018 1 00:00:18 2058084 None \n",
- " User Start JobID \\\n",
- "256 user 2019-01-11T15:44:17 2058085 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
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- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "256 1 c0018 1 00:00:20 2058085 None \n",
- " User Start JobID \\\n",
- "258 user 2019-01-11T15:44:19 2058086 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "258 subj209.lh.V1.OppPRL.8.7to12.1.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "258 1 c0036 1 00:00:24 2058086 None \n",
- " User Start JobID \\\n",
- "260 user 2019-01-11T15:44:27 2058087 \n",
- "\n",
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- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
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- " User Start JobID JobName \\\n",
- "262 user 2019-01-11T15:44:33 2058088 subj209.lh.V1.PRL.11to21.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
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- "\n",
- " jid step \n",
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- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "264 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:22 \n",
- "\n",
- " jid step \n",
- "264 2058089 None \n",
- " User Start JobID JobName \\\n",
- "266 user 2019-01-11T15:44:34 2058090 subj301.lh.V1.PRL.3.1to5.1.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "266 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:24 \n",
- "\n",
- " jid step \n",
- "266 2058090 None \n",
- " User Start JobID JobName \\\n",
- "268 user 2019-01-11T15:44:35 2058091 subj209.lh.V1.PRL.3.7to5.7.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "268 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:18 \n",
- "\n",
- " jid step \n",
- "268 2058091 None \n",
- " User Start JobID JobName \\\n",
- "270 user 2019-01-11T15:44:35 2058092 subj303.lh.V1.PRL.3.9to7.7.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "270 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:16 \n",
- "\n",
- " jid step \n",
- "270 2058092 None \n",
- " User Start JobID JobName \\\n",
- "272 user 2019-01-11T15:44:37 2058093 subj209.lh.V1.PRL.4.2to6.4.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "272 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:21 \n",
- "\n",
- " jid step \n",
- "272 2058093 None \n",
- " User Start JobID JobName \\\n",
- "274 user 2019-01-11T15:44:42 2058094 subj209.lh.V1.PRL.4.5to6.5.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "274 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:23 \n",
- "\n",
- " jid step \n",
- "274 2058094 None \n",
- " User Start JobID JobName \\\n",
- "276 user 2019-01-11T15:44:43 2058095 subj209.lh.V1.PRL.4to6.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "276 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:22 \n",
- "\n",
- " jid step \n",
- "276 2058095 None \n",
- " User Start JobID JobName \\\n",
- "278 user 2019-01-11T15:44:50 2058096 subj209.lh.V1.PRL.5.1to7.1.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "278 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:25 \n",
- "\n",
- " jid step \n",
- "278 2058096 None \n",
- " User Start JobID JobName \\\n",
- "280 user 2019-01-11T15:44:51 2058097 subj209.lh.V1.PRL.5.1to7.8.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "280 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:17 \n",
- "\n",
- " jid step \n",
- "280 2058097 None \n",
- " User Start JobID JobName \\\n",
- "282 user 2019-01-11T15:44:52 2058098 subj209.lh.V1.PRL.5.5to8.5.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "282 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:23 \n",
- "\n",
- " jid step \n",
- "282 2058098 None \n",
- " User Start JobID \\\n",
- "284 user 2019-01-11T15:44:54 2058099 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "284 subj210.lh.V1.PRL.5.6to13.9.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "284 1 c0018 1 00:00:16 2058099 None \n",
- " User Start JobID JobName \\\n",
- "286 user 2019-01-11T15:44:54 2058100 subj209.lh.V1.PRL.5.7to7.7.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "286 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:21 \n",
- "\n",
- " jid step \n",
- "286 2058100 None \n",
- " User Start JobID JobName \\\n",
- "288 user 2019-01-11T15:45:00 2058101 subj307.lh.V1.PRL.5.8to9.8.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "288 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:20 \n",
- "\n",
- " jid step \n",
- "288 2058101 None \n",
- " User Start JobID JobName \\\n",
- "290 user 2019-01-11T15:45:00 2058102 subj210.lh.V1.PRL.5to7.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "290 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:20 \n",
- "\n",
- " jid step \n",
- "290 2058102 None \n"
- ]
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- "\n",
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- "292 subj304.lh.V1.PRL.6.1to10.2.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "292 1 c0036 1 00:00:26 2058103 None \n",
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- "294 user 2019-01-11T15:45:00 2058104 subj209.lh.V1.PRL.6.2to8.2.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "294 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:26 \n",
- "\n",
- " jid step \n",
- "294 2058104 None \n",
- " User Start JobID JobName \\\n",
- "296 user 2019-01-11T15:45:38 2058105 subj310.lh.V1.PRL.6.3to11.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "296 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:19 \n",
- "\n",
- " jid step \n",
- "296 2058105 None \n",
- " User Start JobID JobName \\\n",
- "298 user 2019-01-11T15:45:38 2058106 subj209.lh.V1.PRL.6.5to8.5.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "298 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:20 \n",
- "\n",
- " jid step \n",
- "298 2058106 None \n",
- " User Start JobID JobName \\\n",
- "300 user 2019-01-11T15:45:38 2058107 subj210.lh.V1.PRL.6.5to8.8.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "300 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:20 \n",
- "\n",
- " jid step \n",
- "300 2058107 None \n",
- " User Start JobID JobName \\\n",
- "302 user 2019-01-11T15:45:38 2058108 subj305.lh.V1.PRL.6.6to10.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "302 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:22 \n",
- "\n",
- " jid step \n",
- "302 2058108 None \n",
- " User Start JobID JobName \\\n",
- "304 user 2019-01-11T15:45:38 2058109 subj209.lh.V1.PRL.7.2to9.2.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "304 COMPLETED express NaN 5000Mc 1 c0018 1 00:00:20 \n",
- "\n",
- " jid step \n",
- "304 2058109 None \n",
- " User Start JobID JobName \\\n",
- "306 user 2019-01-11T15:45:38 2058110 subj209.lh.V1.PRL.7to9.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "306 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:24 \n",
- "\n",
- " jid step \n",
- "306 2058110 None \n",
- " User Start JobID \\\n",
- "308 user 2019-01-11T15:45:38 2058111 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "308 subj209.lh.V1.PRL.8.2to10.2.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "308 1 c0036 1 00:00:25 2058111 None \n",
- " User Start JobID JobName \\\n",
- "310 user 2019-01-11T15:45:38 2058112 subj210.lh.V1.PRL.8.2to16.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "310 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:23 \n",
- "\n",
- " jid step \n",
- "310 2058112 None \n",
- " User Start JobID \\\n",
- "312 user 2019-01-11T15:45:38 2058113 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "312 subj209.lh.V1.PRL.8.7to12.1.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "312 1 c0036 1 00:00:23 2058113 None \n",
- " User Start JobID \\\n",
- "314 user 2019-01-11T15:45:38 2058114 \n",
- "\n",
- " JobName State Partition MaxRSS ReqMem \\\n",
- "314 subj209.lh.V1.PRL.9.9to15.3.label COMPLETED express NaN 5000Mc \n",
- "\n",
- " ReqCPUS NodeList NNodes Elapsed jid step \n",
- "314 1 c0036 1 00:00:24 2058114 None \n",
- " User Start JobID JobName \\\n",
- "316 user 2019-01-11T15:45:38 2058115 subj209.lh.V1.PRL.9to13.label \n",
- "\n",
- " State Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed \\\n",
- "316 COMPLETED express NaN 5000Mc 1 c0036 1 00:00:23 \n",
- "\n",
- " jid step \n",
- "316 2058115 None \n",
- " User Start JobID JobName State Partition \\\n",
- "318 user 2019-01-11T15:43:12 2058116 PS_MATLAB CANCELLED by 0 medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "318 NaN 12000Mc 1 c0052 1 00:18:00 2058116 None \n",
- " User Start JobID JobName State \\\n",
- "321 user 2019-01-11T16:01:55 2058181 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "321 medium NaN 2000Mc 1 c0006 1 01:47:48 2058181 \n",
- "\n",
- " step \n",
- "321 None \n",
- " User Start JobID JobName State \\\n",
- "323 user 2019-01-11T16:25:40 2058182 Pipe_star_index COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "323 express NaN 10000Mc 6 c0015 1 00:24:30 2058182 \n",
- "\n",
- " step \n",
- "323 None \n",
- " User Start JobID JobName State \\\n",
- "325 user 2019-01-11T16:01:55 2058183 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "325 medium NaN 2000Mc 1 c0017 1 01:27:15 2058183 \n",
- "\n",
- " step \n",
- "325 None \n",
- " User Start JobID JobName State \\\n",
- "327 user 2019-01-11T16:01:55 2058184 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "327 short NaN 2000Mc 2 c0019 1 00:10:43 2058184 \n",
- "\n",
- " step \n",
- "327 None \n",
- " User Start JobID JobName State \\\n",
- "329 user 2019-01-11T16:04:10 2058185 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "329 short NaN 2000Mc 2 c0010 1 00:09:04 2058185 \n",
- "\n",
- " step \n",
- "329 None \n",
- " User Start JobID JobName State \\\n",
- "331 user 2019-01-11T16:05:17 2058186 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "331 short NaN 2000Mc 2 c0010 1 00:08:49 2058186 \n",
- "\n",
- " step \n",
- "331 None \n",
- " User Start JobID JobName State \\\n",
- "333 user 2019-01-11T16:06:22 2058187 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "333 short NaN 2000Mc 2 c0010 1 00:10:56 2058187 \n",
- "\n",
- " step \n",
- "333 None \n",
- " User Start JobID JobName State \\\n",
- "335 user 2019-01-11T16:04:10 2058188 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "335 medium NaN 2000Mc 1 c0080 1 02:41:00 2058188 \n",
- "\n",
- " step \n",
- "335 None \n",
- " User Start JobID JobName State \\\n",
- "337 user 2019-01-11T16:07:27 2058189 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "337 medium NaN 2000Mc 1 c0010 1 01:48:57 2058189 \n",
- "\n",
- " step \n",
- "337 None \n",
- " User Start JobID JobName State \\\n",
- "339 user 2019-01-11T16:07:27 2058190 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "339 medium NaN 2000Mc 1 c0010 1 01:51:16 2058190 \n",
- "\n",
- " step \n",
- "339 None \n"
- ]
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- " User Start JobID JobName State \\\n",
- "341 user 2019-01-11T16:07:27 2058191 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "341 short NaN 2000Mc 2 c0011 1 00:12:35 2058191 \n",
- "\n",
- " step \n",
- "341 None \n",
- " User Start JobID JobName State \\\n",
- "343 user 2019-01-11T16:09:07 2058192 Pipe_fastqc_pre COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "343 short NaN 2000Mc 2 c0024 1 00:08:44 2058192 \n",
- "\n",
- " step \n",
- "343 None \n",
- " User Start JobID JobName State \\\n",
- "345 user 2019-01-11T16:11:17 2058193 Pipe_trim_galore COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "345 medium NaN 2000Mc 1 c0024 1 01:42:38 2058193 \n",
- "\n",
- " step \n",
- "345 None \n",
- " User Start JobID JobName State \\\n",
- "347 user 2019-01-11T16:04:10 2058194 PS_MATLAB CANCELLED by 10985 \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "347 medium NaN 12000Mc 1 c0040 1 01:22:47 2058194 \n",
- "\n",
- " step \n",
- "347 None \n",
- " User Start JobID JobName State Partition \\\n",
- "350 user 2019-01-11T16:14:20 2058196 lfmatlab TIMEOUT medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "350 NaN 4Gc 1 c0010 1 1-00:00:19 2058196 None \n",
- " User Start JobID JobName State \\\n",
- "353 user 2019-01-11T17:16:32 2058221 PS_MATLAB CANCELLED by 10985 \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "353 medium NaN 12000Mc 1 c0053 1 00:10:51 2058221 \n",
- "\n",
- " step \n",
- "353 None \n",
- " User Start JobID JobName State \\\n",
- "356 user 2019-01-11T17:19:24 2058228 PS_MATLAB CANCELLED by 10985 \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "356 medium NaN 24000Mc 1 c0013 1 00:07:41 2058228 \n",
- "\n",
- " step \n",
- "356 None \n",
- " User Start JobID JobName State Partition MaxRSS \\\n",
- "359 user 2019-01-11T17:27:34 2058259 PS_MATLAB TIMEOUT medium NaN \n",
- "\n",
- " ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "359 24000Mc 1 c0011 1 1-00:00:05 2058259 None \n",
- " User Start JobID JobName State Partition \\\n",
- "362 user 2019-01-11T17:40:14 2058273 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "362 NaN 10000Mc 6 c0040 1 00:14:59 2058273 None \n",
- " User Start JobID JobName State \\\n",
- "364 user 2019-01-11T17:29:40 2058274 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "364 short NaN 2000Mc 2 c0028 1 00:08:48 2058274 \n",
- "\n",
- " step \n",
- "364 None \n",
- " User Start JobID JobName State Partition \\\n",
- "366 user 2019-01-11T17:50:48 2058364 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "366 NaN 10000Mc 6 c0036 1 00:16:43 2058364 None \n",
- " User Start JobID JobName State \\\n",
- "368 user 2019-01-11T17:49:59 2058365 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "368 short NaN 2000Mc 2 c0005 1 00:10:03 2058365 \n",
- "\n",
- " step \n",
- "368 None \n",
- " User Start JobID JobName State \\\n",
- "370 user 2019-01-11T17:53:56 2058366 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "370 short NaN 2000Mc 2 c0006 1 00:08:40 2058366 \n",
- "\n",
- " step \n",
- "370 None \n",
- " User Start JobID JobName State Partition \\\n",
- "372 user 2019-01-11T17:53:59 2058367 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "372 NaN 10000Mc 6 c0013 1 00:15:10 2058367 None \n",
- " User Start JobID JobName State Partition \\\n",
- "374 user 2019-01-11T17:55:17 2058368 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "374 NaN 2000Mc 1 c0006 1 00:04:56 2058368 None \n",
- " User Start JobID JobName State Partition \\\n",
- "376 user 2019-01-11T17:56:27 2058369 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "376 NaN 10000Mc 6 c0018 1 00:13:50 2058369 None \n",
- " User Start JobID JobName State \\\n",
- "378 user 2019-01-11T17:56:27 2058370 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "378 short NaN 2000Mc 2 c0078 1 00:14:34 2058370 \n",
- "\n",
- " step \n",
- "378 None \n",
- " User Start JobID JobName State \\\n",
- "380 user 2019-01-11T17:58:47 2058371 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "380 short NaN 2000Mc 2 c0023 1 00:08:16 2058371 \n",
- "\n",
- " step \n",
- "380 None \n",
- " User Start JobID JobName State Partition \\\n",
- "382 user 2019-01-11T17:58:47 2058372 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "382 NaN 10000Mc 6 c0027 1 00:14:07 2058372 None \n",
- " User Start JobID JobName State Partition \\\n",
- "384 user 2019-01-11T18:07:35 2058374 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "384 NaN 2000Mc 1 c0017 1 00:05:33 2058374 None \n",
- " User Start JobID JobName State Partition \\\n",
- "386 user 2019-01-11T18:09:15 2058376 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "386 NaN 2000Mc 1 c0042 1 00:05:46 2058376 None \n",
- " User Start JobID JobName State Partition \\\n",
- "388 user 2019-01-11T18:10:25 2058377 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "388 NaN 2000Mc 1 c0064 1 00:05:17 2058377 None \n",
- " User Start JobID JobName State Partition MaxRSS \\\n",
- "390 user 2019-01-11T18:12:37 2058378 rserver FAILED short NaN \n",
- "\n",
- " ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "390 2Gc 2 c0023 1 00:00:01 2058378 None \n",
- " User Start JobID JobName State Partition \\\n",
- "392 user 2019-01-11T18:12:56 2058379 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "392 NaN 2000Mc 1 c0068 1 00:05:19 2058379 None \n",
- " User Start JobID JobName State Partition MaxRSS \\\n",
- "394 user 2019-01-11T18:14:43 2058380 rserver FAILED short NaN \n",
- "\n",
- " ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "394 2Gc 2 c0023 1 00:00:01 2058380 None \n",
- " User Start JobID JobName State Partition MaxRSS \\\n",
- "396 user 2019-01-11T18:15:45 2058381 rserver FAILED short NaN \n",
- "\n",
- " ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "396 2Gc 2 c0023 1 00:00:02 2058381 None \n",
- " User Start JobID JobName State \\\n",
- "398 user 2019-01-11T18:16:46 2058382 rserver CANCELLED by 10993 \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "398 short NaN 12000Mc 2 c0078 1 01:32:36 2058382 \n",
- "\n",
- " step \n",
- "398 None \n",
- " User Start JobID JobName State Partition \\\n",
- "400 user 2019-01-11T18:45:17 2058384 Pipe_star COMPLETED short \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "400 NaN 10000Mc 6 c0013 1 00:15:54 2058384 None \n"
- ]
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- "output_type": "stream",
- "text": [
- " User Start JobID JobName State \\\n",
- "402 user 2019-01-11T18:45:17 2058385 Pipe_fastqc_post COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "402 short NaN 2000Mc 2 c0023 1 00:09:36 2058385 \n",
- "\n",
- " step \n",
- "402 None \n",
- " User Start JobID JobName State Partition \\\n",
- "404 user 2019-01-11T19:01:21 2058407 Pipe_samtools COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "404 NaN 2000Mc 1 c0042 1 00:06:02 2058407 None \n",
- " User Start JobID JobName State \\\n",
- "406 user 2019-01-11T19:01:21 2058408 Pipe_featurecounts COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "406 short NaN 5000Mc 12 c0013 1 00:57:35 2058408 \n",
- "\n",
- " step \n",
- "406 None \n",
- " User Start JobID JobName State \\\n",
- "408 user 2019-01-11T19:59:00 2058416 Pipe_fix_counts COMPLETED \n",
- "\n",
- " Partition MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid \\\n",
- "408 express NaN 2000Mc 1 c0023 1 00:00:06 2058416 \n",
- "\n",
- " step \n",
- "408 None \n",
- " User Start JobID JobName State Partition \\\n",
- "410 user 2019-01-11T19:59:10 2058417 Pipe_multiqc COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "410 NaN 2000Mc 1 c0023 1 00:00:28 2058417 None \n",
- " User Start JobID JobName State Partition \\\n",
- "412 user 2019-01-11T19:59:41 2058418 Pipe_report COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "412 NaN 2000Mc 1 c0023 1 00:00:06 2058418 None \n",
- " User Start JobID JobName State Partition \\\n",
- "414 user 2019-01-11T22:27:07 2058477 bash COMPLETED medium \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "414 7744K 10000Mc 1 c0033 1 00:48:26 2058477 None \n",
- " User Start JobID JobName State Partition \\\n",
- "415 user 2019-01-11T22:40:46 2058505 subj001 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "415 NaN 5000Mc 1 c0012 1 00:01:25 2058505 None \n",
- " User Start JobID JobName State Partition \\\n",
- "417 user 2019-01-11T23:08:47 2058609 subj001 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "417 NaN 5000Mc 1 c0008 1 00:01:32 2058609 None \n",
- " User Start JobID JobName State Partition \\\n",
- "419 user 2019-01-11T23:08:51 2058610 subj002 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "419 NaN 5000Mc 1 c0012 1 00:01:32 2058610 None \n",
- " User Start JobID JobName State Partition \\\n",
- "421 user 2019-01-11T23:08:51 2058611 subj003 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "421 NaN 5000Mc 1 c0005 1 00:10:05 2058611 None \n",
- " User Start JobID JobName State Partition \\\n",
- "423 user 2019-01-11T23:08:51 2058612 subj004 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "423 NaN 5000Mc 1 c0006 1 00:01:40 2058612 None \n",
- " User Start JobID JobName State Partition \\\n",
- "425 user 2019-01-11T23:08:53 2058613 subj005 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "425 NaN 5000Mc 1 c0031 1 00:10:03 2058613 None \n",
- " User Start JobID JobName State Partition \\\n",
- "427 user 2019-01-11T23:08:57 2058614 subj006 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "427 NaN 5000Mc 1 c0031 1 00:00:52 2058614 None \n",
- " User Start JobID JobName State Partition \\\n",
- "429 user 2019-01-11T23:08:57 2058615 subj007 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "429 NaN 5000Mc 1 c0031 1 00:10:29 2058615 None \n",
- " User Start JobID JobName State Partition \\\n",
- "431 user 2019-01-11T23:08:59 2058616 subj008 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "431 NaN 5000Mc 1 c0031 1 00:00:57 2058616 None \n",
- " User Start JobID JobName State Partition \\\n",
- "433 user 2019-01-11T23:09:05 2058617 subj009 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "433 NaN 5000Mc 1 c0027 1 00:01:44 2058617 None \n",
- " User Start JobID JobName State Partition \\\n",
- "435 user 2019-01-11T23:09:05 2058618 subj010 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "435 NaN 5000Mc 1 c0027 1 00:10:21 2058618 None \n",
- " User Start JobID JobName State Partition \\\n",
- "437 user 2019-01-11T23:09:10 2058619 subj011 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "437 NaN 5000Mc 1 c0027 1 00:10:16 2058619 None \n",
- " User Start JobID JobName State Partition \\\n",
- "439 user 2019-01-11T23:09:15 2058620 subj012 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "439 NaN 5000Mc 1 c0027 1 00:01:59 2058620 None \n",
- " User Start JobID JobName State Partition \\\n",
- "441 user 2019-01-11T23:09:19 2058621 subj013 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "441 NaN 5000Mc 1 c0027 1 00:01:00 2058621 None \n",
- " User Start JobID JobName State Partition \\\n",
- "443 user 2019-01-11T23:09:24 2058622 subj014 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "443 NaN 5000Mc 1 c0027 1 00:10:02 2058622 None \n",
- " User Start JobID JobName State Partition \\\n",
- "445 user 2019-01-11T23:09:24 2058623 subj015 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "445 NaN 5000Mc 1 c0015 1 00:10:02 2058623 None \n",
- " User Start JobID JobName State Partition \\\n",
- "447 user 2019-01-11T23:09:29 2058624 subj016 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "447 NaN 5000Mc 1 c0061 1 00:10:27 2058624 None \n",
- " User Start JobID JobName State Partition \\\n",
- "449 user 2019-01-11T23:09:35 2058625 subj017 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "449 NaN 5000Mc 1 c0015 1 00:01:57 2058625 None \n",
- " User Start JobID JobName State Partition \\\n",
- "451 user 2019-01-11T23:09:40 2058626 subj018 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "451 NaN 5000Mc 1 c0015 1 00:10:16 2058626 None \n",
- " User Start JobID JobName State Partition \\\n",
- "453 user 2019-01-11T23:09:44 2058628 subj019 TIMEOUT express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "453 NaN 5000Mc 1 c0015 1 00:10:12 2058628 None \n",
- " User Start JobID JobName State Partition \\\n",
- "455 user 2019-01-11T23:09:49 2058629 subj020 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "455 NaN 5000Mc 1 c0031 1 00:01:33 2058629 None \n"
- ]
- },
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- "output_type": "stream",
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- " User Start JobID JobName State Partition \\\n",
- "457 user 2019-01-11T23:09:56 2058630 subj021 TIMEOUT express \n",
- "\n",
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- "457 NaN 5000Mc 1 c0015 1 00:10:00 2058630 None \n",
- " User Start JobID JobName State Partition \\\n",
- "459 user 2019-01-11T23:10:02 2058631 subj022 COMPLETED express \n",
- "\n",
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- "459 NaN 5000Mc 1 c0031 1 00:01:50 2058631 None \n",
- " User Start JobID JobName State Partition \\\n",
- "461 user 2019-01-11T23:10:05 2058632 subj023 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "461 NaN 5000Mc 1 c0062 1 00:01:57 2058632 None \n",
- " User Start JobID JobName State Partition \\\n",
- "463 user 2019-01-11T23:10:11 2058633 subj024 TIMEOUT express \n",
- "\n",
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- "463 NaN 5000Mc 1 c0015 1 00:10:15 2058633 None \n",
- " User Start JobID JobName State Partition \\\n",
- "465 user 2019-01-11T23:10:14 2058635 subj025 COMPLETED express \n",
- "\n",
- " MaxRSS ReqMem ReqCPUS NodeList NNodes Elapsed jid step \n",
- "465 NaN 5000Mc 1 c0015 1 00:01:48 2058635 None \n",
- " User Start JobID JobName State Partition \\\n",
- "467 user 2019-01-11T23:10:19 2058636 subj026 COMPLETED express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
- "469 user 2019-01-11T23:10:23 2058637 subj027 COMPLETED express \n",
- "\n",
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- "469 NaN 5000Mc 1 c0012 1 00:01:39 2058637 None \n",
- " User Start JobID JobName State Partition \\\n",
- "471 user 2019-01-11T23:10:26 2058638 subj028 COMPLETED express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
- "473 user 2019-01-11T23:10:31 2058639 subj029 TIMEOUT express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
- "475 user 2019-01-11T23:10:35 2058640 subj030 TIMEOUT express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
- "477 user 2019-01-11T23:10:38 2058641 subj031 TIMEOUT express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
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- "\n",
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- " User Start JobID JobName State Partition \\\n",
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- "\n",
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- "483 user 2019-01-11T23:10:49 2058647 subj034 TIMEOUT express \n",
- "\n",
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- "\n",
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- " User Start JobID JobName State Partition \\\n",
- "487 user 2019-01-11T23:10:58 2058649 subj036 TIMEOUT express \n",
- "\n",
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- " User Start JobID JobName State Partition \\\n",
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- "\n",
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- " User Start JobID JobName State Partition \\\n",
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- "\n",
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- "497 user 2019-01-11T23:11:05 2058654 subj041 COMPLETED express \n",
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- ]
- },
- {
- "ename": "KeyboardInterrupt",
- "evalue": "",
- "output_type": "error",
- "traceback": [
- "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)",
- "\u001b[0;32m<ipython-input-38-e9725ecc537d>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m 2\u001b[0m \u001b[0muserDF\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mdf\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdropna\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msubset\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m\"User\"\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mjid\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mdf\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mjid\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0munique\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 4\u001b[0;31m \u001b[0muserDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'MaxRSS'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0muserDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'jid'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0mjid\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mbatchDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'MaxRSS'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mbatchDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'jid'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0mjid\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 5\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0muserDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0muserDF\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'jid'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0mjid\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/series.py\u001b[0m in \u001b[0;36m__setitem__\u001b[0;34m(self, key, value)\u001b[0m\n\u001b[1;32m 937\u001b[0m \u001b[0;31m# do the setitem\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 938\u001b[0m \u001b[0mcacher_needs_updating\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_check_is_chained_assignment_possible\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 939\u001b[0;31m \u001b[0msetitem\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 940\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcacher_needs_updating\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 941\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_maybe_update_cacher\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/series.py\u001b[0m in \u001b[0;36msetitem\u001b[0;34m(key, value)\u001b[0m\n\u001b[1;32m 928\u001b[0m \u001b[0mkey\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mcheck_bool_indexer\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mindex\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkey\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 929\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 930\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_where\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m~\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0minplace\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mTrue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 931\u001b[0m \u001b[0;32mreturn\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 932\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mInvalidIndexError\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/generic.py\u001b[0m in \u001b[0;36m_where\u001b[0;34m(self, cond, other, inplace, axis, level, errors, try_cast)\u001b[0m\n\u001b[1;32m 7624\u001b[0m \u001b[0minplace\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mTrue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0maxis\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mblock_axis\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 7625\u001b[0m transpose=self._AXIS_REVERSED)\n\u001b[0;32m-> 7626\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_update_inplace\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mnew_data\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 7627\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 7628\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/series.py\u001b[0m in \u001b[0;36m_update_inplace\u001b[0;34m(self, result, **kwargs)\u001b[0m\n\u001b[1;32m 397\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m_update_inplace\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 398\u001b[0m \u001b[0;31m# we want to call the generic version and not the IndexOpsMixin\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 399\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mgeneric\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mNDFrame\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_update_inplace\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 400\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 401\u001b[0m \u001b[0;34m@\u001b[0m\u001b[0mproperty\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/generic.py\u001b[0m in \u001b[0;36m_update_inplace\u001b[0;34m(self, result, verify_is_copy)\u001b[0m\n\u001b[1;32m 3185\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_clear_item_cache\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3186\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_data\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mgetattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'_data'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 3187\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_maybe_update_cacher\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mverify_is_copy\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mverify_is_copy\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 3188\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3189\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0madd_prefix\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mprefix\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/generic.py\u001b[0m in \u001b[0;36m_maybe_update_cacher\u001b[0;34m(self, clear, verify_is_copy)\u001b[0m\n\u001b[1;32m 2570\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2571\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mverify_is_copy\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2572\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_check_setitem_copy\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstacklevel\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m5\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mt\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m'referant'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 2573\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2574\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mclear\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;32m~/.conda/envs/wsmplayground/lib/python3.6/site-packages/pandas/core/generic.py\u001b[0m in \u001b[0;36m_check_setitem_copy\u001b[0;34m(self, stacklevel, t, force)\u001b[0m\n\u001b[1;32m 2671\u001b[0m \u001b[0;31m# the copy weakref\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2672\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2673\u001b[0;31m \u001b[0mgc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcollect\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m2\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 2674\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mgc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mget_referents\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_is_copy\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2675\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_is_copy\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
- "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
- ]
- }
- ],
- "source": [
- "batchDF=df.dropna(subset=[\"MaxRSS\"])\n",
- "userDF=df.dropna(subset=[\"User\"])\n",
- "for jid in df.jid.unique():\n",
- " userDF['MaxRSS'][userDF['jid'] == jid]=batchDF['MaxRSS'][batchDF['jid'] == jid]\n",
- " \n",
- " print(userDF[userDF['jid'] == jid])\n",
- " \n",
- "userDF.head()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "metadata": {},
- "outputs": [],
- "source": []
- }
- ],
- "metadata": {
- "kernelspec": {
- "display_name": "Python [conda env:wsmplayground]",
- "language": "python",
- "name": "conda-env-wsmplayground-py"
- },
- "language_info": {
- "codemirror_mode": {
- "name": "ipython",
- "version": 3
- },
- "file_extension": ".py",
- "mimetype": "text/x-python",
- "name": "python",
- "nbconvert_exporter": "python",
- "pygments_lexer": "ipython3",
- "version": "3.6.8"
- },
- "toc": {
- "base_numbering": 1,
- "nav_menu": {},
- "number_sections": true,
- "sideBar": true,
- "skip_h1_title": false,
- "title_cell": "Table of Contents",
- "title_sidebar": "Contents",
- "toc_cell": false,
- "toc_position": {},
- "toc_section_display": true,
- "toc_window_display": false
- }
- },
- "nbformat": 4,
- "nbformat_minor": 2
-}
diff --git a/neurobiologyusage.txt b/neurobiologyusage.txt
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index 719867c68c9825edb80e9b51a6386d95fb1a042f..0000000000000000000000000000000000000000
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