From 6738fe083a3846c55b8487e74b41b3826bc0c59c Mon Sep 17 00:00:00 2001
From: Ravi Tripathi <ravi89@uab.edu>
Date: Tue, 30 Apr 2019 14:32:22 -0500
Subject: [PATCH] Adding basic information about using a singularity container
---
singularity_container.ipynb | 52 ++++++++++++++++++++++++++++++++++++-
1 file changed, 51 insertions(+), 1 deletion(-)
diff --git a/singularity_container.ipynb b/singularity_container.ipynb
index e57b4aa..69ed64d 100644
--- a/singularity_container.ipynb
+++ b/singularity_container.ipynb
@@ -51,7 +51,57 @@
},
"outputs": [],
"source": [
- "!module avail Singularity\n"
+ "!module avail Singularity"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "As you might have already noticed that we already loaded a Singularity module while starting up this notebook. You can check the version of the Singularity loaded below:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "!singularity --version"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Basic singularity command line functions:\n",
+ "\n",
+ "To check the basic functions or command line options provided run help on the singularity "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "!singularity --help"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "To check more information about a particular parameter, use help in conjunction with that parameter"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "!singularity build help"
]
}
],
--
GitLab