diff --git a/README.md b/README.md index 7f3c0205ae3de270781c8611673ebb16f7e11296..3b9168df3b134865a6003f3f52f1e287a4da7fba 100644 --- a/README.md +++ b/README.md @@ -15,11 +15,22 @@ Copy and paste the following code into the editor window. (Replace all current c #!/bin/bash # JOB HEADERS HERE -git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/$USER/r-visualizations +git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/$USER/singularity_containers ``` # Start Jupyter Notebook -Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal +Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal using following settings: +## Environment Setup: +``` +# Load required modules +module load Singularity/2.5.2-GCC-5.4.0-2.26 +module load Anaconda3 +``` + +## Extra Jupyter Arguments: +``` +--notebook-dir=/data/user/$USER/singularity_containers +```