From 65328c9cfbbb5b7f41a83e27c20891cb578ea3a9 Mon Sep 17 00:00:00 2001
From: Augustin Zidek <augustinzidek@google.com>
Date: Tue, 19 Nov 2024 16:21:50 +0000
Subject: [PATCH] Fix Singularity run commands
PiperOrigin-RevId: 698024666
---
docs/installation.md | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/docs/installation.md b/docs/installation.md
index 9bfc0d4..36322c0 100644
--- a/docs/installation.md
+++ b/docs/installation.md
@@ -385,7 +385,7 @@ singularity exec \
--bind <MODEL_PARAMETERS_DIR>:/root/models \
--bind <DB_DIR>:/root/public_databases \
alphafold3.sif \
- python alphafold3/run_alphafold.py \
+ python run_alphafold.py \
--json_path=/root/af_input/fold_input.json \
--model_dir=/root/models \
--db_dir=/root/public_databases \
@@ -396,13 +396,14 @@ Or with some databases on SSD in location `<SSD_DB_DIR>`:
```sh
singularity exec \
- --nv alphafold3.simg \
+ --nv \
--bind $HOME/af_input:/root/af_input \
--bind $HOME/af_output:/root/af_output \
--bind <MODEL_PARAMETERS_DIR>:/root/models \
--bind <SSD_DB_DIR>:/root/public_databases \
--bind <DB_DIR>:/root/public_databases_fallback \
- python alphafold3/run_alphafold.py \
+ alphafold3.sif \
+ python run_alphafold.py \
--json_path=/root/af_input/fold_input.json \
--model_dir=/root/models \
--db_dir=/root/public_databases \
--
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