From eabe102f94854a70cd386dbea8e461ea89c95b66 Mon Sep 17 00:00:00 2001 From: Augustin Zidek <augustinzidek@google.com> Date: Wed, 13 Nov 2024 11:14:54 +0000 Subject: [PATCH] Mention fundamental flags in the README PiperOrigin-RevId: 696059716 --- README.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/README.md b/README.md index 0864122..415b2f2 100644 --- a/README.md +++ b/README.md @@ -73,6 +73,16 @@ python run_alphafold.py \ --output_dir=/root/af_output ``` +There are various flags that you can pass to the `run_alphafold.py` command, to +list them all run `python run_alphafold.py --help`. Two fundamental flags that +control which parts AlphaFold 3 will run are: + +* `--run_data_pipeline` (defaults to `true`): whether to run the data + pipeline, i.e. genetic and template search. This part is CPU-only, time + consuming and could be run on a machine without a GPU. +* `--run_inference` (defaults to `true`): whether to run the inference. This + part requires a GPU. + ## AlphaFold 3 Input See the [input documentation](docs/input.md). -- GitLab