From 4cc1aad5390525d069154a69f2feabb9e139bb08 Mon Sep 17 00:00:00 2001
From: mdefende <mdefende@uab.edu>
Date: Tue, 2 Jul 2024 14:18:52 -0500
Subject: [PATCH] move env files into separate folder

---
 Dockerfile                            | 4 ++--
 cellxgene.txt => envs/cellxgene.txt   | 0
 spyder_env.yml => envs/spyder_env.yml | 0
 3 files changed, 2 insertions(+), 2 deletions(-)
 rename cellxgene.txt => envs/cellxgene.txt (100%)
 rename spyder_env.yml => envs/spyder_env.yml (100%)

diff --git a/Dockerfile b/Dockerfile
index d828319..61f2c96 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -16,11 +16,11 @@ RUN apt-get update && \
 RUN useradd -ms /bin/bash clarkad
 
 # Create the spyder environment to run out of. The container will start with this environment active, but you can switch to a different kernel inside spyder and have it run without issue
-ADD spyder_env.yml /tmp/spyder_env.yml
+ADD ./envs/spyder_env.yml /tmp/spyder_env.yml
 RUN conda env create -y -f /tmp/spyder_env.yml
 
 # Create the cellxgene environment based on an environment file. 
-ADD cellxgene.txt /tmp/cellxgene.txt
+ADD ./envs/cellxgene.txt /tmp/cellxgene.txt
 RUN conda create -y --name cellxgene --file /tmp/cellxgene.txt
 
 SHELL ["bash"]
diff --git a/cellxgene.txt b/envs/cellxgene.txt
similarity index 100%
rename from cellxgene.txt
rename to envs/cellxgene.txt
diff --git a/spyder_env.yml b/envs/spyder_env.yml
similarity index 100%
rename from spyder_env.yml
rename to envs/spyder_env.yml
-- 
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