From 766426bee223e48aefd6badc8370ffd4a1a12a2d Mon Sep 17 00:00:00 2001
From: Matthew Defenderfer <mdefende@uab.edu>
Date: Mon, 8 Jul 2024 11:49:41 -0500
Subject: [PATCH] fix spyder env name and conda run command
---
Dockerfile | 3 +--
envs/spyder_env.yml | 2 +-
2 files changed, 2 insertions(+), 3 deletions(-)
diff --git a/Dockerfile b/Dockerfile
index d26152e..b4a9974 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,7 +8,6 @@ ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update && \
apt-get install -y \
libgl1-mesa-glx \
- libxtst6 \
less \
nano \
&& apt-get clean && \
@@ -25,4 +24,4 @@ ADD ./envs/cellxgene.txt /tmp/cellxgene.txt
RUN conda create -y --name cellxgene --file /tmp/cellxgene.txt
SHELL ["bash"]
-ENTRYPOINT [ "conda", "run", "--no-capture-output", "-n", "spyder-env", "spyder" ]
\ No newline at end of file
+ENTRYPOINT [ "conda", "run", "--no-capture-output", "-n", "spyder-env", "-p", "/opt/conda/envs", "spyder" ]
\ No newline at end of file
diff --git a/envs/spyder_env.yml b/envs/spyder_env.yml
index 9d3cb88..dd731fd 100644
--- a/envs/spyder_env.yml
+++ b/envs/spyder_env.yml
@@ -1,4 +1,4 @@
-name: spyder
+name: spyder-env
channels:
- conda-forge
- defaults
--
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