From c9895ea3b5c69160dd75488facae0ee53fa5c109 Mon Sep 17 00:00:00 2001
From: Matthew Defenderfer <mdefende@uab.edu>
Date: Thu, 6 Mar 2025 15:40:04 -0600
Subject: [PATCH] add before script and try out the module version instead of
singularity
---
template/before.sh.erb | 2 ++
template/script.sh.erb | 12 +++++++-----
2 files changed, 9 insertions(+), 5 deletions(-)
create mode 100644 template/before.sh.erb
diff --git a/template/before.sh.erb b/template/before.sh.erb
new file mode 100644
index 0000000..e9323a3
--- /dev/null
+++ b/template/before.sh.erb
@@ -0,0 +1,2 @@
+# Export the module function if it exists
+[[ $(type -t module) == "function" ]] && export -f module
diff --git a/template/script.sh.erb b/template/script.sh.erb
index 3ea2f7f..5da8887 100755
--- a/template/script.sh.erb
+++ b/template/script.sh.erb
@@ -24,7 +24,7 @@ cd "${HOME}"
# Start Pycharm
#
-export SINGULARITY_BINDPATH='/data,/scratch,/local,/share'
+# export SINGULARITY_BINDPATH='/data,/scratch,/local,/share'
# Load Anaconda3
module load Anaconda3
@@ -34,7 +34,9 @@ module list
# Launch PyCharm
set -x
-singularity exec --env \"DISPLAY=$DISPLAY\" -B \"/tmp/.X11-unix:/tmp/.X11-unix\" \
- <%= context.extra_singularity_args %> \
- <%= context.container_path %> \
- pycharm
\ No newline at end of file
+# singularity exec --env \"DISPLAY=$DISPLAY\" -B \"/tmp/.X11-unix:/tmp/.X11-unix\" \
+# <%= context.extra_singularity_args %> \
+# <%= context.container_path %> \
+# pycharm
+
+module --ignore-cache load PyCharm/2022.3.2
\ No newline at end of file
--
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