From d4bc40a5284981397b85c5852d7aca5cab5be5cb Mon Sep 17 00:00:00 2001
From: Krish Moodbidri <krish94@uab.edu>
Date: Wed, 15 May 2019 11:39:42 -0500
Subject: [PATCH] Modified to suit SAS environmentwq
---
form.yml | 78 +++++++++++++++++-------------------------
manifest.yml | 10 +++---
submit.yml.erb | 14 ++++----
template/script.sh.erb | 19 +++-------
4 files changed, 46 insertions(+), 75 deletions(-)
diff --git a/form.yml b/form.yml
index 3781047..a2e2fe5 100644
--- a/form.yml
+++ b/form.yml
@@ -1,56 +1,40 @@
---
-cluster: "owens"
-form:
- - version
- - bc_account
- - bc_num_hours
- - bc_num_slots
- - num_cores
- - node_type
- - bc_vnc_resolution
- - bc_email_on_started
+cluster: "{{ cluster_name }}"
attributes:
- num_cores:
- widget: "number_field"
- label: "Number of cores"
+ bc_num_hours:
+ value: 1
+
+ bc_num_slots:
+ label: Number of CPU
value: 1
- help: |
- Number of cores on node type (4 GB per core unless requesting whole
- node). Leave blank if requesting full node.
- min: 0
- max: 48
+ min: 1
+ max: 24
step: 1
- id: 'num_cores'
- bc_num_slots: "1"
- bc_vnc_resolution:
- required: true
- bc_account:
- label: "Project"
- help: "You can leave this blank if **not** in multiple projects."
- node_type:
+
+ bc_num_mems:
+ widget: "number_field"
+ label: Memory per CPU (GB)
+ value: 4
+ min: 1
+ max: 128
+ step: 1
+
+ bc_partition:
widget: select
- label: "Node type"
- help: |
- - **any** - (*1-28 cores*) Use any available Owens node. This reduces the
- wait time as there are no node requirements.
- - **hugemem** - (*48 cores*) Use an Owens node that has 1.5TB of
- available RAM as well as 48 cores. There are 16 of these nodes on
- Owens. Requesting hugemem nodes allocates entire nodes.
- - **vis** - (*1-28 cores*) Use an Owens node that has an [NVIDIA Tesla P100
- GPU](http://www.nvidia.com/object/tesla-p100.html) with an X server
- running in the background. This utilizes the GPU for hardware
- accelerated 3D visualization. There are 160 of these nodes on Owens.
+ label: Partition
options:
- - [ "any", "" ]
- - [ "hugemem", ":hugemem" ]
- - [ "vis", ":vis:gpus=1" ]
+ - [ "low", "low" ]
+
version:
widget: select
- label: "MATLAB version"
- help: "This defines the version of MATLAB you want to load."
+ label: "SAS version"
+ help: "This defines the version of SAS you want to load."
options:
- - [ "R2018b", "matlab/r2018b" ]
- - [ "R2018a", "matlab/r2018a" ]
- - [ "R2017a", "matlab/r2017a" ]
- - [ "R2016b", "matlab/r2016b" ]
- - [ "R2015b", "matlab/r2015b" ]
+ - [ "v9.4", "sas/v9.4" ]
+form:
+ - version
+ - bc_num_hours
+ - bc_partition
+ - bc_num_slots
+ - bc_num_mems
+ - bc_email_on_started
diff --git a/manifest.yml b/manifest.yml
index 0841d1e..cd4010d 100644
--- a/manifest.yml
+++ b/manifest.yml
@@ -1,11 +1,11 @@
---
-name: MATLAB
+name: SAS
category: Interactive Apps
subcategory: GUIs
role: batch_connect
description: |
- This app will launch a [MATLAB] GUI on the [Owens cluster]. You will be able
- to interact with the MATLAB GUI through a VNC session.
+ This app will launch a [SAS] GUI on the [Cheaha cluster]. You will be able
+ to interact with the SAS GUI through a VNC session.
- [MATLAB]: https://www.mathworks.com/products/matlab.html
- [Owens cluster]: https://www.osc.edu/resources/technical_support/supercomputers/owens
+ [SAS]: https://www.sas.com/en_us/home.html
+ [Cheaha cluster]: https://docs.uabgrid.uab.edu/wiki/Cheaha_GettingStarted
diff --git a/submit.yml.erb b/submit.yml.erb
index 1ced835..8b17d32 100644
--- a/submit.yml.erb
+++ b/submit.yml.erb
@@ -1,13 +1,11 @@
-<%-
-ppn = num_cores.blank? ? 28 : num_cores.to_i
-if node_type == ':hugemem'
- ppn = 48
-end
-%>
---
batch_connect:
template: vnc
script:
native:
- resources:
- nodes: "<%= bc_num_slots.blank? ? "1" : bc_num_slots.to_i %>:ppn=<%= ppn %><%= node_type %>"
+ - "-N 1"
+ - "-n <%= bc_num_slots.blank? ? 1 : bc_num_slots.to_i %>"
+ - "--mem-per-cpu=<%= bc_num_mems.blank? ? 4 : bc_num_mems.to_i %>G"
+ - "--partition=<%= bc_partition %>"
+ - "--time=<%= bc_num_hours.blank? ? 1 : bc_num_hours.to_i %>:00:00"
+
diff --git a/template/script.sh.erb b/template/script.sh.erb
index 3f4d585..43ecbe5 100755
--- a/template/script.sh.erb
+++ b/template/script.sh.erb
@@ -1,6 +1,5 @@
#!/usr/bin/env bash
-<%- gpu = context.node_type.include?("vis") -%>
# Clean the environment
module purge
@@ -26,20 +25,10 @@ cd "${HOME}"
) &
#
-# Start MATLAB
+# Start SAS
#
# Load the required environment
-module load <%= context.version %>
-
-# Launch MATLAB
-<%- if gpu -%>
-module load intel/16.0.3 virtualgl
-module list
-set -x
-vglrun matlab -desktop -nosoftwareopengl
-<%- else -%>
-module list
-set -x
-matlab -desktop
-<%- end -%>
+module load sas
+# Launch SAS
+sas
--
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