From 68da64c3ebd7fad48a74068695d7787c194f094a Mon Sep 17 00:00:00 2001
From: Matthew K Defenderfer <mdefende@uab.edu>
Date: Mon, 16 Sep 2024 16:03:19 -0500
Subject: [PATCH] remove last singularity mention
---
src/convert-to-parquet/run-convert-to-parquet.sh | 2 --
1 file changed, 2 deletions(-)
diff --git a/src/convert-to-parquet/run-convert-to-parquet.sh b/src/convert-to-parquet/run-convert-to-parquet.sh
index 3d94806..c729a08 100755
--- a/src/convert-to-parquet/run-convert-to-parquet.sh
+++ b/src/convert-to-parquet/run-convert-to-parquet.sh
@@ -86,8 +86,6 @@ if [[ -z "$outdir" ]]; then
outdir="${gpfs_logdir}/parquet"
fi
-singularity pull --force gpfs.sif docker://${sif}
-
nlogs=$(ls ${gpfs_logdir}/list-* | wc -l)
cmd="python3 convert-to-parquet.py -o ${outdir} -f \${log}"
--
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