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Commit 1628c119 authored by Manavalan Gajapathy's avatar Manavalan Gajapathy
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makes tmp folder more isolated

parent 9cf8f117
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1 merge request!2QC under one umbrella (well mostly) under QuaC
......@@ -105,7 +105,7 @@ def create_snakemake_command(args, repo_path, mount_paths):
# directory to use as tmp in singularity container
# If not exist, singularity will complain
tmp_dir = os.path.expandvars("$USER_SCRATCH/tmp/quac")
tmp_dir = os.path.expandvars("$USER_SCRATCH/tmp/quac/tmp")
make_dir(tmp_dir)
quac_configs = {
......
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