Skip to content
Snippets Groups Projects
Commit 1e884e0e authored by Manavalan Gajapathy's avatar Manavalan Gajapathy
Browse files

removes globbing from indexcov - #34

parent d8ecee8f
No related branches found
No related tags found
1 merge request!3Accept only-one-sample per project as input to QuaC
......@@ -154,12 +154,11 @@ rule indexcov:
str(WORKFLOW_PATH / "configs/env/goleft.yaml")
params:
outdir=lambda wildcards, output: Path(output[0]).parent,
infiles=lambda wildcards: str(PROJECT_PATH / f"{{{','.join(SAMPLES)}}}" / "bam" / "*.bam"),
shell:
r"""
goleft indexcov \
--directory {params.outdir} \
{params.infiles} \
{input.bam} \
> {log} 2>&1
"""
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment