.gitmodules

.test/README.md

.test/configs/include_priorQC/project_1sample.ped

.test/configs/include_priorQC/project_2samples.ped

.test/configs/no_priorQC/project_1sample.ped

.test/configs/no_priorQC/project_2samples.ped

...ngs-data/test_project/analysis/A/qc/dedup/A-1.metrics.txt

...ngs-data/test_project/analysis/A/qc/dedup/A-2.metrics.txt

...ngs-data/test_project/analysis/B/qc/dedup/B-1.metrics.txt

...ngs-data/test_project/analysis/B/qc/dedup/B-2.metrics.txt

.test/ngs-data/test_project/analysis/C/bam/C.bam

.test/ngs-data/test_project/analysis/C/bam/C.bam.bai

...alysis/C/configs/small_variant_caller/capture_regions.bed

.test/ngs-data/test_project/analysis/C/vcf/C.vcf.gz

.test/ngs-data/test_project/analysis/C/vcf/C.vcf.gz.tbi

.test/ngs-data/test_project/analysis/D/bam/D.bam

.test/ngs-data/test_project/analysis/D/bam/D.bam.bai

...alysis/D/configs/small_variant_caller/capture_regions.bed

.test/ngs-data/test_project/analysis/D/vcf/D.vcf.gz

.test/ngs-data/test_project/analysis/D/vcf/D.vcf.gz.tbi