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User configurable hardware resources

Manavalan Gajapathy requested to merge qualimap_bamqc-cluster-config into master

Merge request

Please fill in the checklist below and comment as needed.

  • Was code modified? Briefly describe. See below
  • Was documentation modified? Briefly describe.
  • Is this a bug-fix? Briefly describe. Yes. See below
  • Is this a feature addition? Briefly describe. Yes. See below
  • Did you modify QuaC-Watch config file? If so, did you modify multiqc template configs/multiqc_config_template.jinja2 and script src/quac_watch/create_mutliqc_configs.py as necessary? No
  • Did you perform system-level testing manually as described in master readme doc? Did it pass completely? If not why?
  • Updated Changelog.md file with change logs in recommended format?

Anything else reviewer should know?

  • Previously hardcoded hardware resources for snakemake rules can now be supplied via configs/workflow.yaml (closes #48 (closed))
  • Modified multiqc conda env config to use explicit dependencies to get around installation issues (closes #47 (closed))
Edited by Manavalan Gajapathy

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