Explicit conda env (!5) · Merge requests · center-for-computational-genomics-and-data-science / public / QuaC · GitLab

Snippets Groups Projects

This is an archived project. Repository and other project resources are read-only.

Closed Manavalan Gajapathy requested to merge explicit_conda_env into flexible_input_reqts 2 years ago

Apr 28, 2022
- defines explicit conda env using quac v1.0 conda env - closes #49 · 6ddf6d9b
  Manavalan Gajapathy authored 3 years ago
  
  6ddf6d9b
Apr 07, 2022
- updates doc · bf726885
  Manavalan Gajapathy authored 3 years ago
  
  bf726885
- updates doc · aa34c181
  Manavalan Gajapathy authored 3 years ago
  
  aa34c181
- minor formatting fix · 7fd7cd0b
  Manavalan Gajapathy authored 3 years ago
  
  7fd7cd0b
- rolls back no more necessary changes · c9adfc82
  Manavalan Gajapathy authored 3 years ago
  
  c9adfc82
- passes hardware resources via workflow config · 6f25e006
  Manavalan Gajapathy authored 3 years ago
  
  6f25e006
- uses super specific versions for multiqc conda env - see #47 · e48521b5
  Manavalan Gajapathy authored 3 years ago
  
  e48521b5
- defines mem for qualimap using workflow config · a53a3f41
  Manavalan Gajapathy authored 3 years ago
  
  a53a3f41
Apr 05, 2022
- uses local conda to sidestep wrapper's - #47 · 9712962a
  Manavalan Gajapathy authored 3 years ago
  
  9712962a
- uses local wrapper for multiqc - fixes #47 · 7db6966e
  Manavalan Gajapathy authored 3 years ago
  
  7db6966e
Apr 04, 2022
- adds python dependency to env · d978b2c7
  Manavalan Gajapathy authored 3 years ago
  
  d978b2c7
- adds snakemake wrapper of 0.64.0/bio/multiqc- #47 · e0208acd
  Manavalan Gajapathy authored 3 years ago
  
  e0208acd
- Added qualimap_bamqc to cluster config to parameterize java_mem · 17453fc5
  Deeptha Srirangam authored 3 years ago
  
  17453fc5