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Commit cd4e3f3f authored by Robert Phillips's avatar Robert Phillips
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module load SAMtools
cd /data/user/rphill3/Enhancer_Ident_ATAC
samtools merge Hpc_ATAC_merged.bam AS0011_K1_S2.bam AS0011_K2_S4.bam AS0011_K4_S6.bam AS0011_V1_S1.bam AS0011_V2_S3.bam AS0011_V4_S5.bam
samtools sort Hpc_ATAC_merged.bam -o Hpc_ATAC_merged.sorted.bam
samtools index Hpc_ATAC_merged.sorted.bam Hpc_ATAC_merged.sorted.bam.bai
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