Update README.md

README.md

 A yml and a set of instructions to build a functioning environment for the Research Computing 
-# clone this repo:
-```
-$git clone https://gitlab.rc.uab.edu/rc-data-science/createandparsesacct.git /data/user/saisri/slurm-ds
-```
-Now load the Anaconda module and create environment on Cheaha cluster:
+
+# clone this repo and update with the job composer
+
+Copy and paste the following job script into a job composer job on rc.uab.edu
+
 ```
-$module load Anaconda3
-$conda env create -f environment-slurm-ds.yml
+#!/bin/bash
+#SBATCH --partition=pascalnodes
+#SBATCH --gres=gpu:1
+#SBATCH --mem-per-cpu=4000
+module load cuda10.0/toolkit
+module load Anaconda3
+
+FOLDER=/data/user/$USER/slurm-ds
+URL=https://gitlab.rc.uab.edu/rc-data-science/createandparsesacct.git
+if [ ! -d "$FOLDER" ] ; then
+    git clone "$URL" "$FOLDER"
+conda env create -f /data/user/$USER/slurm-ds/environment-slurm-ds.yml
+else
+    cd $FOLDER
+    git pull "$URL"
+    conda env update -f /data/user/$USER/slurm-ds/environment-slurm-ds.yml
+fi
 ```
 If we have to create a database from sacct
 ```
-directoryToUse="/data/user/$USER/VariousNeurology/user/"
-sacct -P -u $USER --starttime=2019-01-01 --format user,start,jobid,jobname,state,partition,maxrss,reqmem,reqcpus,node,nnodes,elapsed >> "$directoryToUse"userusage.db
+directoryToUse="/data/user/$USER/group"
+sacct -P -u $USER --starttime=2019-01-01 --format user,start,jobid,jobname,state,partition,maxrss,reqmem,reqcpus,node,nnodes,elapsed >> "$directoryToUse"group.db
 ```
 # Check to see if the environment works