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Commit 5371cd67 authored by Fortune Iriaye's avatar Fortune Iriaye
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Merge branch 'edit-readme' into 'main'

Made changes to readme file

See merge request !2
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# Using this container on Cheaha
You will need to follow these instructions:
1. If you already cloned the Alphafold3 [github repo](https://github.com/google-deepmind/alphafold3), you do not need to clone this repo. But if you have not, you can clone this gitlab repo.
1. Download the needed databases for Alphafold3 by running the command. Make sure you are in the same folder as the `fetch_databases.sh` file before running the below command, or use the absolute file path to run it.
``` bash
./fetch_databases.sh <DB_DIR> #<DB_DIR> is your preferred location for storing the databases
```
1. Now pull the container with singularity using
``` bash
singularity pull alphafold3.sif docker://gitlab.rc.uab.edu/rc-data-science/community-containers/Alphafold3/
```
1. When the above step is completed, you can now run the Alphafold3 container on Cheaha using the command to test it out.
``` bash
singularity exec --nv alphafold3.sif sh -c 'nvidia-smi'
```
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