Convert Stockholm to A3M without reading the whole file into RAM (cb2133d0) · Commits · RC Data Science / community-containers / Alphafold3 · GitLab

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cb2133d0

Commit cb2133d0 authored 5 months ago by Augustin Zidek

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Convert Stockholm to A3M without reading the whole file into RAM

PiperOrigin-RevId: 698003594

parent e60f750b

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Changes 4

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src/alphafold3/data/parsers.py 6 additions, 4 deletions

src/alphafold3/data/parsers.py
src/alphafold3/data/tools/hmmsearch.py 3 additions, 5 deletions

src/alphafold3/data/tools/hmmsearch.py
src/alphafold3/data/tools/jackhmmer.py 3 additions, 4 deletions

src/alphafold3/data/tools/jackhmmer.py
src/alphafold3/data/tools/nhmmer.py 28 additions, 29 deletions

src/alphafold3/data/tools/nhmmer.py

with 40 additions and 42 deletions

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