Update Dockerfile

docker/Dockerfile

@@ -11,12 +11,14 @@
 FROM nvidia/cuda:12.6.0-base-ubuntu22.04
 
 # Some RUN statements are combined together to make Docker build run faster.
-# Get latest package listing, install software-properties-common, git and wget.
+# Get latest package listing, install software-properties-common, git, wget,
+# compilers and libraries.
 # git is required for pyproject.toml toolchain's use of CMakeLists.txt.
+# gcc, g++, make are required for compiling hmmer and AlphaFold 3 libaries.
+# zlib is a required dependency of AlphaFold 3.
 RUN apt update --quiet \
     && apt install --yes --quiet software-properties-common \
-    && apt install --yes --quiet git wget \
-    && apt install --yes --quiet g++ make build-essential cmake
+    && apt install --yes --quiet git wget gcc g++ make zlib1g-dev zstd
 
 # Get apt repository of specific Python versions. Then install Python. Tell APT
 # this isn't an interactive TTY to avoid timezone prompt when installing.
@@ -46,7 +48,6 @@ COPY . /app/alphafold
 WORKDIR /app/alphafold
 
 # Install the Python dependencies AlphaFold 3 needs.
-RUN pip3 install setuptools wheel build
 RUN pip3 install -r dev-requirements.txt
 RUN pip3 install --no-deps .
 # Build chemical components database (this binary was installed by pip).
@@ -60,4 +61,4 @@ ENV XLA_FLAGS="--xla_gpu_enable_triton_gemm=false"
 ENV XLA_PYTHON_CLIENT_PREALLOCATE=true
 ENV XLA_CLIENT_MEM_FRACTION=0.95
 
-CMD ["python3", "run_alphafold.py"]
+CMD ["python3", "run_alphafold.py"]
\ No newline at end of file