Cloned AlphaFold 3 repo into this one (!1) · Merge requests · RC Data Science / community-containers / Alphafold3

Merged Fortune Iriaye requested to merge clone-alphafold3-github into main 6 months ago

Nov 20, 2024
- Merge Alphafold github into main · f88b0985
  Ubuntu authored 6 months ago
  
  f88b0985
- Add Alphafold_github as a submodule · 5a106e1c
  Ubuntu authored 6 months ago
  
  5a106e1c
- Fix setup to work with Python 3.12 · 23e3d46d
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 698035568
```
  23e3d46d
- Use model dir flag for run_alphafold_test · 025701f0
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 698034193
```
  025701f0
Nov 19, 2024
- Fix Singularity run commands · 65328c9c
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 698024666
```
  65328c9c
- Convert Stockholm to A3M without reading the whole file into RAM · cb2133d0
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 698003594
```
  cb2133d0
- Don't read more Stockholm sequences than necessary when converting to a3m · e60f750b
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697979915
```
  e60f750b
- Improve error message for flash attention implementation not supported · 35996125
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697937778
```
  35996125
- Remove unused MsaToolResult.num_hits · 7e3067b8
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697929605
```
  7e3067b8
- Update pip in the virtual environment · 899b16d8
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697911731
```
  899b16d8
Nov 18, 2024
- Add a table of H100 inference timings to docs/performance.md · b108eedc
  Jacob Kelly authored 6 months ago
```
PiperOrigin-RevId: 697644061
```
  b108eedc
- Fail hard if running on a device with GPU capability < 8.0 · a08cffd6
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697640745
```
  a08cffd6
- Silence redundant warnings and report missing templates · 08ee672e
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697637011
```
  08ee672e
- Don't print whole param payload if it is corrupt · 83c4be2e
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697635175
```
  83c4be2e
- Documentation updates - older GPUs and JAX installation · 4b2b5671
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697634146
```
  4b2b5671
- Fix type annotation · b618d2d5
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697633892
```
  b618d2d5
- Replace the db download script with a faster one and add GCP post-processing scripts · 01b87c24
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 697631760
```
  01b87c24
Nov 14, 2024
- Fix pallas GLU kernel on large inputs and update documentation for compilation buckets. · 2ffe43f5
  Jacob Kelly authored 6 months ago
```
PiperOrigin-RevId: 696513320
```
  2ffe43f5
- Display a user-friendly warning if curl or zstd are missing · 1d3e173b
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 696440060
```
  1d3e173b
- Fix default model directory and remove a superfluous word · bd9cd55b
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 696434352
```
  bd9cd55b
Nov 13, 2024
- Update fetch_databases to use os.access to test permissions · 44e1fd57
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 696093699
```
  44e1fd57
- Mention fundamental flags in the README · eabe102f
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 696059716
```
  eabe102f
- Fix path handling in templates · 3c27a149
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 696046311
```
  3c27a149
Nov 12, 2024
- Update singularity instructions (thanks davidecarlson!) · e07682c0
  mlbileschi authored 6 months ago
```
PiperOrigin-RevId: 695790186
```
  e07682c0
- Documentation fixes and silence irrelevant warning · 0341fb7f
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 695740242
```
  0341fb7f
Nov 11, 2024
- Make fetch_databases compatible with Python 3.6 · e2afc41e
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 695389383
```
  e2afc41e
- Remove incorrect trailing comma in README · 7393d8b0
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 695374082
```
  7393d8b0
- Small documentation fixes · 77f84ea6
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 695328242
```
  77f84ea6
- Initial release of AlphaFold 3 · 4f52a3bb
  Augustin Zidek authored 6 months ago
```
PiperOrigin-RevId: 695257954
```
  4f52a3bb

Cloned AlphaFold 3 repo into this one

Merge request reports

Activity