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RC Data Science
community-containers
Deeplabcut
Commits
3981dfa2
Commit
3981dfa2
authored
8 months ago
by
Premas
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Pipeline
#12012
passed with stage
Stage: build
in 30 minutes and 37 seconds
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3981dfa2
...
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@@ -23,7 +23,6 @@ RUN apt-get update && apt-get install -y \
python3.9
\
python3.9-dev
\
python3.9-venv
\
python3-pip
\
git
\
libegl1-mesa
\
libgles2-mesa
\
...
...
@@ -58,66 +57,32 @@ RUN apt-get update && apt-get install -y \
zip
\
&&
rm
-rf
/var/lib/apt/lists
#RUN add-apt-repository ppa:beineri/opt-qt-6.2.0-bionic
RUN
apt-get update
RUN
apt-get
install
-y
qt6-base-dev
#RUN apt-get update && apt-get install -y \
# build-essential \
# libxcb-xinerama0 \
# libxcb1 \
#qt5-qmake \
#qtbase5-dev \
#qtchooser \
#qtbase5-dev-tools \
#libxcb1-dev \
#libssl-dev \
#sip-dev \
#&& apt-get clean
#RUN apt-get update && apt-get install -y \
# xvfb \
# && apt-get clean
#RUN apt-get update && apt-get install -y libgl1-mesa-glx libxkbcommon0 && apt-get clean
#RUN pip install --upgrade pip
#RUN pip install tf-slim
# Set python3.9 as the default python version
RUN
update-alternatives
--install
/usr/bin/python3 python3 /usr/bin/python3.9 1
# Verify Python installation
RUN
python3
--version
# Upgrade pip to the latest version
#RUN pip install --upgrade pip
# Install git
#RUN apt-get update
#&& apt-get install -y git
# Clone the DeepLabCut repository
RUN
git clone https://github.com/DeepLabCut/DeepLabCut.git
# Change the working directory to DeepLabCut
WORKDIR
/app/DeepLabCut
RUN
git checkout v2.3.8
RUN
python3
-m
venv deepenv
# Upgrade pip within the virtual environment
RUN
pip
install
--upgrade
pip
RUN
/app/DeepLabCut/deepenv/bin/
pip
install
--upgrade
pip
RUN
/app/DeepLabCut/deepenv/bin/pip
install
wheel
# Install compatible versions of numpy and typing-extensions
RUN
/app/DeepLabCut/deepenv/bin/pip
install
numpy
==
1.24.3 typing-extensions
==
4.5.0
#RUN /app/DeepLabCut/deepenv/bin/pip install deeplabcut[gui]==2.3.8
# Install dependencies within the virtual environment
RUN
/app/DeepLabCut/deepenv/bin/pip
install
-r
requirements.txt
RUN
/app/DeepLabCut/deepenv/bin/pip
install
deeplabcut[gui]
==
2.3.8
#RUN /app/DeepLabCut/deepenv/bin/pip install .["gui"]
# Install PyQt5 and Qt5 for graphical user interfaces
#RUN /app/DeepLabCut/deepenv/bin/pip install pyqt5==5.15.9 matplotlib==3.4.3
# Install PySide6 version 6.2.4 (compatible with DeepLabCut)
#RUN /app/DeepLabCut/deepenv/bin/pip install pyside6
#RUN pip install .["gui"]
# Create a virtual environment and activate it
#RUN /app/DeepLabCut/deepenv/bin/pip install deeplabcut[gui]==2.3.8
RUN
/app/DeepLabCut/deepenv/bin/pip
install
.[
"gui"
]
# Install dependencies
ENTRYPOINT
["/bin/bash"]
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