Merge branch 'master' into 'master'

Converted this repo for use with FSL

See merge request rc/bc-uab-fsl!1

form.yml.erb

@@ -41,10 +41,10 @@ attributes:
 
   version:
     widget: select
-    label: "IGV version"
-    help: "This defines the version of IGV you want to load."
+    label: "FSL version"
+    help: "This defines the version of FSL you want to load."
     options:
-      - [ "2.12.2-Java-11", "IGV/2.12.2-Java-11" ]
+      - [ "6.0.3", "FSL/6.0.3" ]
 
 form:
   - version

manifest.yml

 ---
-name: IGV
+name: FSL - FMRIB Software Library
 category: Interactive Apps
 subcategory: GUIs
 role: batch_connect
 description: |
-  This app will launch a [Integrative Genomics Viewer(IGV)] on the [Cheaha]. You will be able
-  to interact with the IGV through a VNC session.
+  This app will launch a [FMRIB Software Library (FSL)] on [Cheaha]. You will be able
+  to interact with FSL through a VNC session.
 
-  [Integrative Genomics Viewer(IGV)]: https://software.broadinstitute.org/software/igv/
-  [Cheaha]: https://docs.uabgrid.uab.edu
+  [FMRIB Software Library (FSL)]: https://fsl.fmrib.ox.ac.uk/fsl/docs/#/
+  [Cheaha]: https://rc.uab.edu

template/script.sh.erb

@@ -25,13 +25,13 @@ cd "${HOME}"
 ) &
 
 #
-# Start Integrative Genomics Viewer
+# Start FMRIB Software Library
 #
 
 # Load the required environment
-module load <%= context.version %>
-# Launch IGV
+module load FSL/6.0.3
+# Launch FSL
 module list
 set -x
-igvtools_gui.command &
-igv.sh
+source /share/apps/rc/software/FSL/6.0.3/fsl/etc/fslconf/fsl.sh
+fsl