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RC Data Science
community-ood-sandbox
bc_uab_jupyterlab_singularity
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!1
add singularity options to the form and script
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add singularity options to the form and script
change-to-singularity
into
master
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Matthew K Defenderfer
requested to merge
change-to-singularity
into
master
1 year ago
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89199a5d
1 commit,
1 year ago
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template/script.sh.erb
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@@ -6,8 +6,9 @@ module reset
@@ -6,8 +6,9 @@ module reset
#
#
# Start JupyterLab Server
# Start JupyterLab Server
#
#
module load Anaconda3
<%=
context
.
custom_environment
.
gsub
(
/\r\n?/
,
"
\n
"
)
%>
<%=
context
.
custom_environment
.
gsub
(
/\r\n?/
,
"
\n
"
)
%>
unset XDG_RUNTIME_DIR
unset XDG_RUNTIME_DIR
export SINGULARITY_BINDPATH='/data,/scratch,/local,/share'
# Launch the JupyterLab Server
# Launch the JupyterLab Server
jupyter-lab --config="${CONFIG_FILE}"
<%=
context
.
extra_jupyter_args
%>
singularity exec
<%=
context
.
extra_singularity_args
%>
<%=
context
.
container_path
%>
jupyter-lab --config="${CONFIG_FILE}"
<%=
context
.
extra_jupyter_args
%>
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