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Commit 2eb39338 authored by Min Gao's avatar Min Gao
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modified: README.md

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Quick start
System requirements:
#Quick start
##System requirements:
Linux/Unix
Python (>= 3.7)
Install Scanpy through conda:
##Install Scanpy through conda:
The Miniconda3 package management system can be used to harmonize all of the software packages. We can install Scanpy using the conda environment.
Use the following commands to install Minicoda3£º
$ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
......@@ -19,9 +19,9 @@ $ conda install -c conda-forge python-igraph leidenalg
$ conda install -c bioconda scanpy
$ conda install -c anaconda ipykernel
Clone the repository:
## Clone the repository:
$ git clone git@gitlab.rc.uab.edu:attis2021/single_cell_rnaseq_scanpy.git
Tutorial:
## Tutorial:
A more detailed tutorial of how to analyze PBMC data use Scanpy can be found in file scanpy_pbmc_tutorial.ipynb.
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