workflow.yaml

datasets:
    # path to ref genome
    ref: "/data/project/worthey_lab/datasets_central/human_reference_genome/processed/GRCh38/no_alt_rel20190408/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna"
    # path to Somalier dataset dependencies
    somalier:
        sites: "/data/project/worthey_lab/manual_datasets_central/somalier/0.2.13/sites/sites.hg38.vcf.gz"
        labels_1kg: "/data/project/worthey_lab/manual_datasets_central/somalier/0.2.13/ancestry/ancestry-labels-1kg.tsv"
        somalier_1kg: "/data/project/worthey_lab/manual_datasets_central/somalier/0.2.13/ancestry/1kg-somalier/"
    # path to verifyBamID dataset dependencies
    verifyBamID:
        svd_dat_wgs: "/data/project/worthey_lab/manual_datasets_central/verifyBamID/2.0.1/resource/wgs/1000g.phase3.100k.b38.vcf.gz.dat"
        svd_dat_exome: "/data/project/worthey_lab/manual_datasets_central/verifyBamID/2.0.1/resource/exome/chr_added/1000g.phase3.10k.b38.exome.vcf.gz.dat"

#### hardware resources ####
resources:
    qualimap_bamqc:
        no_cpu: 2
        mem_per_cpu: "24G"
    mosdepth_coverage:
        no_cpu: 4
    verifybamid:
        no_cpu: 4