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John-Paul Robinson
singularity_containers
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f75c055f
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f75c055f
authored
6 years ago
by
Ravi Tripathi
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Modify README file for the project to add steps to start a Jupyter notebook
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@@ -15,11 +15,22 @@ Copy and paste the following code into the editor window. (Replace all current c
#!/bin/bash
# JOB HEADERS HERE
git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/
$USER
/
r-visualization
s
git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/
$USER
/
singularity_container
s
```
# Start Jupyter Notebook
Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal
Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal
using following settings:
## Environment Setup:
```
# Load required modules
module load Singularity/2.5.2-GCC-5.4.0-2.26
module load Anaconda3
```
## Extra Jupyter Arguments:
```
--notebook-dir=/data/user/$USER/singularity_containers
```
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