Commits · d968bdecb4d1e9af15a38ccb5a77a338ee51cb82 · RC Data Science / community-containers / Alphafold3 · GitLab

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Nov 20, 2024
- Merge branch 'edit-gitlab-ci' into 'main' · d968bdec
  Fortune Iriaye authored 6 months ago
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Made edits to gitlab-ci.yml using alphafold2 example

See merge request !5
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  d968bdec
- Made edits to gitlab-ci.yml using alphafold2 example · ef1f432c
  Ubuntu authored 6 months ago
  
  ef1f432c
- Merge branch 'edit-gitlab-ci' into 'main' · 51c45307
  Fortune Iriaye authored 6 months ago
```
Made edits to gitlab-ci.yml

See merge request !4
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  51c45307
- Made edits to gitlab-ci.yml · e667ff8a
  Ubuntu authored 6 months ago
  
  e667ff8a
- Merge branch 'edit-gitlab-ci' into 'main' · 5d1a3343
  Fortune Iriaye authored 6 months ago
```
Edit gitlab ci

See merge request !3
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  5d1a3343
- :Merge branch 'main' into edit-gitlab-ci · f17319be
  Ubuntu authored 6 months ago
  
  f17319be
- Edited only Dockerfile · eac27abf
  Ubuntu authored 6 months ago
  
  eac27abf
- Merge branch 'edit-readme' into 'main' · 5371cd67
  Fortune Iriaye authored 6 months ago
```
Made changes to readme file

See merge request !2
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  5371cd67
- Made changes to readme file · 1d69e7df
  Ubuntu authored 6 months ago
  
  1d69e7df
- Merge branch 'clone-alphafold3-github' into 'main' · 2e116019
  Fortune Iriaye authored 6 months ago
```
Cloned AlphaFold 3 repo into this one

See merge request !1
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  2e116019
- Merge Alphafold github into main · f88b0985
  Ubuntu authored 6 months ago
  
  f88b0985
- Add Alphafold_github as a submodule · 5a106e1c
  Ubuntu authored 6 months ago
  
  5a106e1c
- Update .gitlab-ci.yml file · 5c7b9e53
  Fortune Iriaye authored 6 months ago
  
  5c7b9e53
- Initial commit · 7808d11a
  Fortune Iriaye authored 6 months ago
  
  7808d11a
- Fix setup to work with Python 3.12 · 23e3d46d
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 698035568
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  23e3d46d
- Use model dir flag for run_alphafold_test · 025701f0
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 698034193
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  025701f0
Nov 19, 2024
- Fix Singularity run commands · 65328c9c
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 698024666
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  65328c9c
- Convert Stockholm to A3M without reading the whole file into RAM · cb2133d0
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 698003594
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  cb2133d0
- Don't read more Stockholm sequences than necessary when converting to a3m · e60f750b
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697979915
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  e60f750b
- Improve error message for flash attention implementation not supported · 35996125
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697937778
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  35996125
- Remove unused MsaToolResult.num_hits · 7e3067b8
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697929605
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  7e3067b8
- Update pip in the virtual environment · 899b16d8
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697911731
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  899b16d8
Nov 18, 2024
- Add a table of H100 inference timings to docs/performance.md · b108eedc
  Jacob Kelly authored 6 months ago
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PiperOrigin-RevId: 697644061
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  b108eedc
- Fail hard if running on a device with GPU capability < 8.0 · a08cffd6
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697640745
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  a08cffd6
- Silence redundant warnings and report missing templates · 08ee672e
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697637011
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  08ee672e
- Don't print whole param payload if it is corrupt · 83c4be2e
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697635175
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  83c4be2e
- Documentation updates - older GPUs and JAX installation · 4b2b5671
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697634146
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  4b2b5671
- Fix type annotation · b618d2d5
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697633892
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  b618d2d5
- Replace the db download script with a faster one and add GCP post-processing scripts · 01b87c24
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 697631760
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  01b87c24
Nov 14, 2024
- Fix pallas GLU kernel on large inputs and update documentation for compilation buckets. · 2ffe43f5
  Jacob Kelly authored 6 months ago
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PiperOrigin-RevId: 696513320
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  2ffe43f5
- Display a user-friendly warning if curl or zstd are missing · 1d3e173b
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 696440060
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  1d3e173b
- Fix default model directory and remove a superfluous word · bd9cd55b
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 696434352
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  bd9cd55b
Nov 13, 2024
- Update fetch_databases to use os.access to test permissions · 44e1fd57
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 696093699
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  44e1fd57
- Mention fundamental flags in the README · eabe102f
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 696059716
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  eabe102f
- Fix path handling in templates · 3c27a149
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 696046311
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  3c27a149
Nov 12, 2024
- Update singularity instructions (thanks davidecarlson!) · e07682c0
  mlbileschi authored 6 months ago
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PiperOrigin-RevId: 695790186
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  e07682c0
- Documentation fixes and silence irrelevant warning · 0341fb7f
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 695740242
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  0341fb7f
Nov 11, 2024
- Make fetch_databases compatible with Python 3.6 · e2afc41e
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 695389383
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  e2afc41e
- Remove incorrect trailing comma in README · 7393d8b0
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 695374082
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  7393d8b0
- Small documentation fixes · 77f84ea6
  Augustin Zidek authored 6 months ago
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PiperOrigin-RevId: 695328242
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  77f84ea6