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Commit 766426be authored by Matthew K Defenderfer's avatar Matthew K Defenderfer
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fix spyder env name and conda run command

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    ...@@ -8,7 +8,6 @@ ENV DEBIAN_FRONTEND=noninteractive ...@@ -8,7 +8,6 @@ ENV DEBIAN_FRONTEND=noninteractive
    RUN apt-get update && \ RUN apt-get update && \
    apt-get install -y \ apt-get install -y \
    libgl1-mesa-glx \ libgl1-mesa-glx \
    libxtst6 \
    less \ less \
    nano \ nano \
    && apt-get clean && \ && apt-get clean && \
    ...@@ -25,4 +24,4 @@ ADD ./envs/cellxgene.txt /tmp/cellxgene.txt ...@@ -25,4 +24,4 @@ ADD ./envs/cellxgene.txt /tmp/cellxgene.txt
    RUN conda create -y --name cellxgene --file /tmp/cellxgene.txt RUN conda create -y --name cellxgene --file /tmp/cellxgene.txt
    SHELL ["bash"] SHELL ["bash"]
    ENTRYPOINT [ "conda", "run", "--no-capture-output", "-n", "spyder-env", "spyder" ] ENTRYPOINT [ "conda", "run", "--no-capture-output", "-n", "spyder-env", "-p", "/opt/conda/envs", "spyder" ]
    \ No newline at end of file \ No newline at end of file
    envs/spyder_env.yml
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    name: spyder name: spyder-env
    channels: channels:
    - conda-forge - conda-forge
    - defaults - defaults
    ......
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