Commits · master · center-for-computational-genomics-and-data-science / public / QuaC

Jan 20, 2023
- Preps QuaC for public availability · bec75027
  Manavalan Gajapathy authored 2 years ago
  
  bec75027
Apr 11, 2022
- User configurable hardware resources · 614a5931
  Manavalan Gajapathy authored 3 years ago
  
  614a5931
Jun 04, 2021
- applies cleanenv to singularity - #28 · e90cd15e
  Manavalan Gajapathy authored 4 years ago
  
  e90cd15e
- supplies uuid from wrapper script - fixes #27 · a80f9225
  Manavalan Gajapathy authored 4 years ago
  
  a80f9225
- makes tmp folder more isolated · 1628c119
  Manavalan Gajapathy authored 4 years ago
  
  1628c119
Jun 02, 2021
- switches qc-checkup to quac_watch · 225d35e8
  Manavalan Gajapathy authored 4 years ago
  
  225d35e8
- adds warning · 6ba83602
  Manavalan Gajapathy authored 4 years ago
  
  6ba83602
May 28, 2021
- refactors to enable use of exome specific configs file · 0e5c94f8
  Manavalan Gajapathy authored 4 years ago
  
  0e5c94f8
- sets rerun_failed to 1 - #22 · f1ddd6c9
  Manavalan Gajapathy authored 4 years ago
  
  f1ddd6c9
- removes panoptes monitoring - #23 · d6243e43
  Manavalan Gajapathy authored 4 years ago
  
  d6243e43
May 11, 2021
- switches to using mem-per-cpu · 280375f8
  Manavalan Gajapathy authored 4 years ago
  
  280375f8
May 10, 2021
- makes workflow and qc-checkup fpaths configurable via cli · fa4125fe
  Manavalan Gajapathy authored 4 years ago
  
  fa4125fe
May 06, 2021
- improves usage doc in readme · c4ef7d51
  Manavalan Gajapathy authored 4 years ago
  
  c4ef7d51
Apr 20, 2021
- adds cli option to choose slurm partition · ee28a73e
  Manavalan Gajapathy authored 4 years ago
  
  ee28a73e
Apr 19, 2021
- bumps up parent quac's partition · 7598d8f5
  Manavalan Gajapathy authored 4 years ago
  
  7598d8f5
Apr 09, 2021
- adds jobname rule to cluster config · a94ba152
  Manavalan Gajapathy authored 4 years ago
  
  a94ba152
- adds panoptes monitoring · 2fa49674
  Manavalan Gajapathy authored 4 years ago
  
  2fa49674
Apr 02, 2021
- refactors variables to include "analysis" to path at higher level · 4a2cdf9a
  Manavalan Gajapathy authored 4 years ago
  
  4a2cdf9a
Mar 31, 2021
- runs quac in singularity container - closes #5 · 7bbcac62
  Manavalan Gajapathy authored 4 years ago
  
  7bbcac62
- removes run-select-tools ability · c11a6628
  Manavalan Gajapathy authored 4 years ago
  
  c11a6628
Mar 16, 2021
- done testing panoptes. removing it now · 3aae1bd5
  Manavalan Gajapathy authored 4 years ago
  
  3aae1bd5
- tries out panoptes monitoring · ec1b9870
  Manavalan Gajapathy authored 4 years ago
  
  ec1b9870
Mar 12, 2021
- fixes mosdepth and somalier errors · 68ead67f
  Manavalan Gajapathy authored 4 years ago
  
  68ead67f
- switches to cli to supply projects_path · fbecca66
  Manavalan Gajapathy authored 4 years ago
  
  fbecca66
- improves readability of supplied configs · 4669d72d
  Manavalan Gajapathy authored 4 years ago
  
  4669d72d
- now runs verifybamid for exome · a3a66de2
  Manavalan Gajapathy authored 4 years ago
  
  a3a66de2
- minor fixes · 80e9da30
  Manavalan Gajapathy authored 4 years ago
  
  80e9da30
- renames wrapper · 5df006ba
  Manavalan Gajapathy authored 4 years ago
  
  5df006ba
- runs the pipeline in conda env · eae34339
  Manavalan Gajapathy authored 4 years ago
  
  eae34339
- cleans up wrapper script · 997d78b7
  Manavalan Gajapathy authored 4 years ago
  
  997d78b7
- defines log dir via cli · 09f99872
  Manavalan Gajapathy authored 4 years ago
  
  09f99872
- cleans up args · 02c5d7b7
  Manavalan Gajapathy authored 4 years ago
  
  02c5d7b7
- adds wrapper tool · 42bebdd5
  Manavalan Gajapathy authored 4 years ago
  
  42bebdd5